Gene lpl2216 details

Gene Information

• Locus tag: lpl2216
• Symbol: rne
• ID: 3113416
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Legionella pneumophila str. Lens
• Kingdom: Bacteria
• Replicon accession: NC_006369
• Strand: +
• Start bp: 2529623
• End bp: 2531614
• Gene Length: 1992 bp
• Protein Length: 663 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 637583993
• Product: ribonuclease E
• Protein accession: YP_127551
• Protein GI: 54295136
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1530] Ribonucleases G and E
• TIGRFAM ID: [TIGR00757] ribonuclease, Rne/Rng family

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAAAAA TGCTAATCAA TGCAATGCAA ACAGAAGAAA TTCGTGTTGC ACTAATTAAA 
AACAATCAAT TATTTGATCT GGACATAGAA TGCCCGGGAG AAATAAAGAA AAAAGGTAAT 
ATCTATAAAG CCATTGTAAC AAGAAGAGAG CCCAGTCTTG ATGCTGTTTT CGTTGAATAT 
GGTTCCAAAC GCCAAGGTTT CTTGCCCCTA AAAGAAATAG CGCCTGAATA TTTAAGCAAG 
AATCCGGAAG AGTTTGGAGA TGAGAAACCT CCAATTACCA GCCTCATCCG TGAAGGTCAA 
GAATTACTTA TTCAAGTGGA TAAAGAAGAA AGAGGGAATA AAGGAGCAGC ACTGACAACT 
TTTATTACCC TGGCAGGTTG CTACCTGGTT TTAATGCCCA ATAACCCTCA TTCGGGCGGA 
ATATCAAGAC GTATTGAAGG TGATGAGCGT GATGAATTAC GCGAAACATT AAATGCTTTA 
ACACTCCCTG AAGACATGGG TCTTATTATT CGCACTGCGG GTGTTGGAAA AAGTCTGGAA 
GAACTGCAAG ATGACTTAAA CATGCTTTGC AATCAGTGGC AATCCATCAA GGAAGCTTAT 
AATTCAGAGC TGGCACCTTG CCTGATTCAT CAAGAGGGCG ATGTCATTAT TCGTTCCATT 
CGTGACAATT TGCGAAAATC CATCAGTGAA ATTATTATTG ATGATCAAAT ATCCTATATC 
AAAGCAAAAC AATACATTGA ACGCGTAAAA CCAGAATTTT TACCTAATCT AAAACTCTAT 
AACAGCAGCA TCCCTCTTTT TAATTTCTAT CAAATTGAAA GCCAAATTGA GACAGCTTAT 
CAGCGACAGG TCATGCTTCC TTCTGGAGGT GCCTTGGTCA TAGATAGAAC TGAAGCTCTG 
GTATCAATTG ATATTAACTC AGCCAAGGCT ACAGGTGGCG CCGACATTGA AGCGACTGCA 
TTAAATACCA ACCTTGAAGC AGCTGATGAA ATTGCTCGCC AGCTTCGCCT GCGTGATTTA 
GGTGGTTTGG TAGTTATTGA TTTTATTGAC ATGAGTTCTA GTAAAAATCA AAGAGAGGTA 
GAAAATCGAC TCAAAGAAGC ACTGCAGGCT GATAGGGCCA GAATTCAAGT AGGGCGAATT 
TCACGCTTTG GCCTTCTTGA AATGTCAAGG CAACGCCTCC GATTATCATT AGGAGAAACT 
GCCCAGGAAA TTTGTCCACG TTGTGAAGGT AGAGGAACTG TACGCAGTAT ACAGTCTCAT 
GGCTTATCAA TTACCCGCCT TATCGAAGAA GAAGCGCTCA AGGAAAAAAC AGCTGAGATT 
CAAGTACAAT TGCCACCAGA AATGGCTACA TTCATTATGA ATGAAAAACG TAATTTTATC 
AGGGACATTG AAAAAAGACA TGGTGTCAGT GTTGTTGTTA TTGCGAATCC TTATATGCAC 
CCTCCACAAT ATACGATTAC TCGCCTGAAA GAAGACAACG TAGGCAAATC TAAAAAACCA 
AGTTACTCAT TGATTCAGCA ACCTGAAGTA CATGTTCCCA GCAGTGATAA AGAACCCGTG 
TCACATGATG AACCTGCTGT GAAATCATTT GCCGAACACA GGGTCATCAA ACACCCTCAA 
ACCAGTTTTA TTAAACGATT ATGGACCAGT TTATTTGGTG GCCATTCAGT TGCCCACACC 
GTAACTCAAG AGCCTGGTAA AAAACATCAT CGTGCTCAAA ACCAAGGTAA ACACCCATCG 
TCCAAAAGCT CAGGAGGAGA CAAACGTCAA CAAGGCAGCA ACGCAAATCG TAGACGTCGT 
TCAGGAGGAG GCCAGCAGCG TTCTTCATCA GGAAATACAA ATGCTGCGGC CAGCACACAT 
CAACAACGAA AAAAATCTAA CCCGAATCAG CAAAGTCATG GCAGCCAACA AAGCAATCGT 
TCAATTCCTG CAAAAAATGA AGGCAACAAA AAAAGGGAAG CCATACTGGC TAAAGAGCAA 
GAGGAGAAAT AG 

 

Protein sequence

MEKMLINAMQ TEEIRVALIK NNQLFDLDIE CPGEIKKKGN IYKAIVTRRE PSLDAVFVEY 
GSKRQGFLPL KEIAPEYLSK NPEEFGDEKP PITSLIREGQ ELLIQVDKEE RGNKGAALTT 
FITLAGCYLV LMPNNPHSGG ISRRIEGDER DELRETLNAL TLPEDMGLII RTAGVGKSLE 
ELQDDLNMLC NQWQSIKEAY NSELAPCLIH QEGDVIIRSI RDNLRKSISE IIIDDQISYI 
KAKQYIERVK PEFLPNLKLY NSSIPLFNFY QIESQIETAY QRQVMLPSGG ALVIDRTEAL 
VSIDINSAKA TGGADIEATA LNTNLEAADE IARQLRLRDL GGLVVIDFID MSSSKNQREV 
ENRLKEALQA DRARIQVGRI SRFGLLEMSR QRLRLSLGET AQEICPRCEG RGTVRSIQSH 
GLSITRLIEE EALKEKTAEI QVQLPPEMAT FIMNEKRNFI RDIEKRHGVS VVVIANPYMH 
PPQYTITRLK EDNVGKSKKP SYSLIQQPEV HVPSSDKEPV SHDEPAVKSF AEHRVIKHPQ 
TSFIKRLWTS LFGGHSVAHT VTQEPGKKHH RAQNQGKHPS SKSSGGDKRQ QGSNANRRRR 
SGGGQQRSSS GNTNAAASTH QQRKKSNPNQ QSHGSQQSNR SIPAKNEGNK KREAILAKEQ 
EEK