Gene lpp1982 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus taglpp1982 
SymbolsecD 
ID3116458 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLegionella pneumophila str. Paris 
KingdomBacteria 
Replicon accessionNC_006368 
Strand
Start bp2244146 
End bp2246002 
Gene Length1857 bp 
Protein Length618 aa 
Translation table11 
GC content40% 
IMG OID637580679 
Productpreprotein translocase subunit SecD 
Protein accessionYP_124296 
Protein GI54297927 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAAATA AATATCCTCT ATGGAAAAAT CTAATGCTGA TAGTGATTGC AGTCATTGGA 
TTTATTTACG CTATACCGAA TTTGTATACG GAAAATCCCG TTGTTCAAAT TTCTGCGGGT
ACAGATGAAG ATACAGAGAC AATAAAAAAT CAGGTAGAGT CCATATTAAA AAATGCCAAT
ATGGATTATA AATCCCTGGT TGTGGAGAGG GATGGGGTAG AGGTAGTATT TTCTTCTACT
GATTCTCAAT TATTAGCTCG TGATGTTATC AAGAATAGCC TGGGATCTGA TTACACAGTG
GCTTTGAATT TAGCGCCTTC CACACCAGCT TGGCTTGAAG CAATTCATGC TGACCCTATG
AAGCAAGGGT TGGACTTAAG AGGCGGTGTT CATTTTCTTC TTGAAGTGGA TGTCGAGAGT
GTTATAAGTC GGCGTTATGA AGGAATAATG AAAAATATTG GCCAAGAATT ACGTGAAGCA
GGTATTCGTT ATTCAGGCAT ACGTTATTTA TCAGATAAAG GGATTGAATT GCGTTTCAGA
GATTCTGACT CAATGGAAAA TGCTTTAGTT GAGTTAAGAC AAAAAATATC TGATGTGGTT
TTTGTTAAAA CTAAAACACA AAATTCAATT TTAGGCGCCA TTTCTCCAGC AGAATTAAAT
TCCATAAGAC AAAATACTAT TGAGCAGACA ATGAGTATCT TGAGAAATCG TGTCAACGAG
CTCGGAGTTG GTGAAGCTGT CGTACAACAA CAAGGGGCGA CTCGAGTCGC CGTAGATTTG
CCAGGCATTC AAGACGCGGC CAGAGCAAAA CAAATACTTG GTGGTACTGC TACTTTGGAA
TTTCATTTGG TTGATCAGGA AAATGACCCT TTCATTGCAA AGCAAACCGG CGTAGTTCCT
GTCAATGATA AGCTGTATAT GATGGATGGT CATCCTATCT TATTAAAGAG ACAGGTCGTT
TTAAGTGGCG ACTCTATTAC GTCAGCAGTG TCCAGTTTTG ATCAACAAAC GGCTTCTCCA
TCTGTTCAAA TTCAATTGGG TGGCGGGGGC GAGAGCTTGT TTACTAAAGT TACGCGTGAA
AATATCGGTA AGCGCATGGC GATCGTTTTT GTGGAAACCA AAACGACTAC ACAAACAATT
AATGGCGAGG AAAAACGAGT AACAAAGAAA GAAGAGCGAG TTATTAGTGC GCCAGTGATT
CAAAATGCTT TAGGCAGCAA TTTCCAGATT ACCGGACTGA CTGATAGCAA AGAAGCAAGT
AATCTGGCTT TATTATTAAG AGCTGGCGCT TTACCTGCTG CAATCTATCC TGTTGAAGAG
CGTACCGTTG GCCCAACTCT TGGAAAGGAA AATATTCGCC GAGGACTTAT TTCCCTGGAA
GTTGGTATGG GTTTAATTTT GGTACTAATG CTCGTGTATT ATCATTTTTT TGGTTTAATT
GCTGATATTG CATTGATGCT GAATTTAGTT TTTCTTTGCG CATTGTTGTC CATAATTGAT
GCGACACTGA CTTTACCGGG AATTGCGGGG ATTGTTTTGA CCGTGGGCAT GGCTGTTGAT
GCCAATGTCC TGATTTATGA GCGGATTAGA GAGGAGTTGC GCAATGGATT GTCTCCTCAA
GCTGCTATTC ATGCAGGATA TGAGCGAGCA TTTTCAACTA TATTGGATGC CAACGTGACT
ACTTTAATTG TAGCTATCAT TTTATTTGCG GTGGGCACAG GACCGGTGCG CGGGTTTGCG
GTTGTCCTTT CTCTAGGTTT GTTAACTTCT ATGTTAACTG GTATTACTTA CACCAGAGCT
ATTGTGAATT GGTATTATGG TGGGCGTAAT GTCAAAAAAT TATCTATAGG CATATAA
 
Protein sequence
MQNKYPLWKN LMLIVIAVIG FIYAIPNLYT ENPVVQISAG TDEDTETIKN QVESILKNAN 
MDYKSLVVER DGVEVVFSST DSQLLARDVI KNSLGSDYTV ALNLAPSTPA WLEAIHADPM
KQGLDLRGGV HFLLEVDVES VISRRYEGIM KNIGQELREA GIRYSGIRYL SDKGIELRFR
DSDSMENALV ELRQKISDVV FVKTKTQNSI LGAISPAELN SIRQNTIEQT MSILRNRVNE
LGVGEAVVQQ QGATRVAVDL PGIQDAARAK QILGGTATLE FHLVDQENDP FIAKQTGVVP
VNDKLYMMDG HPILLKRQVV LSGDSITSAV SSFDQQTASP SVQIQLGGGG ESLFTKVTRE
NIGKRMAIVF VETKTTTQTI NGEEKRVTKK EERVISAPVI QNALGSNFQI TGLTDSKEAS
NLALLLRAGA LPAAIYPVEE RTVGPTLGKE NIRRGLISLE VGMGLILVLM LVYYHFFGLI
ADIALMLNLV FLCALLSIID ATLTLPGIAG IVLTVGMAVD ANVLIYERIR EELRNGLSPQ
AAIHAGYERA FSTILDANVT TLIVAIILFA VGTGPVRGFA VVLSLGLLTS MLTGITYTRA
IVNWYYGGRN VKKLSIGI