Gene lpp1016 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus taglpp1016 
Symbolmfd 
ID3118692 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLegionella pneumophila str. Paris 
KingdomBacteria 
Replicon accessionNC_006368 
Strand
Start bp1129415 
End bp1132876 
Gene Length3462 bp 
Protein Length1153 aa 
Translation table11 
GC content40% 
IMG OID637579711 
Producttranscription-repair coupling factor 
Protein accessionYP_123344 
Protein GI54296975 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG1197] Transcription-repair coupling factor (superfamily II helicase) 
TIGRFAM ID[TIGR00580] transcription-repair coupling factor (mfd) 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATACAA AAACGCTACT TTACCAACCC ACAAAAAATA AACAAATATG GGGGCAACTC 
TATGGTAGCA GTCTGGCACT TGCTTTAGCC GAATATTGCC AACAAACACC CGGGATCAAA
TTACTTATTA CGCAAGACAA CCTATGCGCC AGTCAGTTGC AGGATGAACT ACAATTTTTT
CTAAACCCGA ACCAAAATAC CCAGGAGTTA TTATTTTTTC CCGACTGGGA AACCTTGCCT
TATGATCAAT TCTCTCCTCA TCAAGATATT ATTTCAGAAA GACTCTACAC CTTAAGCAGA
GTTCAACAAA TTACCAATGG AATCATTATT TCTTCAGCCA GCACTTTAAT GCACAGACTT
TCTCCGCCAG AGTTTTTAAA TCAATACGCT TTAATGCTTA AAGAGGGGCA AAAGCTTGAT
CTGAACTCGT TCAGGAATCA GTTGCAACAA GCAGGATACC ATTGTGTTAA TAAAGTGCTT
GAACATGGTG AATACGCACT ACGTGGATCT ATTATTGACG TGTATCCGAT GGGTAGTGGT
TTACCTTTCC GTATCGAGCT ATTTGATGAT GAAATTGAAA GTCTCAGAGA ATTTGATCCG
GAAACACAAC GCACAATAGA AAAAATCAAT CAAATCCATT TGTTACCTGC TCGTGAATTT
CCATTAAATG AACAAAGCCA ATTACACTTC CGACGAGCTT TCAGAGAGTC TTTTCCTGGA
AATCCCAGCC ATTGCCCAAT ATACGAAGCA ATTAGTAACA GTCAATTTCC ATCTGGCATA
GAATATTATC TGCCCTTGTT TTTTGATAAA ACCGTTACCT TTTTTGATTA TCTGCCAGCC
AATGCCAAAA TTTGTTTAAT TGAAGAAACC CAAGAGAATG CTGAGAGATT CTGGCGAGAA
TTAAATGAAC GCTATGAACA ACGGCGTCAT GATGTCAGCC GCCCTATTTT AACCCCAGAT
AACTGCTTTA TTAATCCCAC CGAATTATTA ACTAAAGCTA ACAATTATGA ACAAGTACGC
CTGTATCATA AGCCTTCCGA AAAAAAAGGA GCCTTAAATT TCAATATTGC CAAAGCTCCA
CAACTCCCCA TTGACAGGAA AAATATTGAG CCACTCCGCC AATTAAGTGA GTATTGTTCT
GACCCAACGC GACGCTATCT TATTGTTGTT GAAAGCGCTG GGCGTCGCGA AGTATTACTG
GATCTGCTTA AATCAAGCCA TATCATTCCA AGAACACAAA ACTCGTGGTT GGACTTCATT
TACGATGAAT CCCCCATCAA TATAACTACT GGCCCATTGA TTTATGGCTG TGAATTAACC
GACAAACAAA TTGTGATCAT CGTTGAGTCG CAATTATTTG GTGAACAAAG CACACCTCAA
CGCCGAAGCA CTCAAAAATC AGTTGATCCC GACTTAATCA TACGAGATAT GGCCGAACTT
CGATTGGGCG CTCCTGTTGT ACATCTTCAA TTTGGAGTAG GTCGCTATCA AGGTTTGCAA
TACATCGACT CCAATGGTAC CCCCAGTGAG TTCCTCGTCC TTGCTTATGC AGGGGATGAC
AAAATCTATG TCCCAGTCAC TTCTCTGCAT ATGATAAGCC GGTATACTGG TGTGGACAGT
GAACACGCCC CTTTGCATAA ACTGGGTTCT GATCAATGGC AAAAGGAAAA AAAGAAAGCG
GCCGAGAAGA TTCATGATGT TGCAATTGAG TTATTGGATC TCTATGCTAA AAGAGAAGCC
CAGCCAGGGC ACCAATACGA TTTCAATCAA TCCGAATATA TAAAATTCGC CAGTGGCTTC
CCCTTTACAG AAACACCAGA TCAACTTCAG GCTATTGAAC AAATTATTAG GGACATGCAA
TCACCAAGAC CGATGGATCG CCTAATCTGT GGTGATGTAG GATTTGGCAA AACAGAAGTC
GCCATGCGTG CTGCATTCGT AGCAGTACAA AATGGAAAAC AAGTCTGTAT CCTTGCTCCA
ACTACCTTGC TTGCAGGACA ACATTTTGAG TCATTTCGCG ATAGATTTGC AGAGTTTCCT
GTTAATATTG AATTATTATC CCGCTTTCGC AGTAATAAAG AGTCCGAAGC AGTCCTTGCC
GCATTGCAAT CAGGTAAAGT AGATATTGTG ATTGGAACCC ATAAATTATT CCAAAATAAT
ATTTCTTTCA AAAACCTGGG ATTACTGATT ATTGATGAAG AACATCGATT TGGAGTGAAA
CAAAAGGAAC ATATTAAATC GCTTCGTACT CATGTTGATA TTTTATCCAT GACTGCTACT
CCAATTCCCA GAACCTTGAA CATGGCAATG GCGGGAATCA GAGATATTTC ACTTATTGCA
ACACCGCCCG CCAAGCGTTT GGCGATTAAA ACATTTTGGC AAGAAAAAAA TGATCTCACC
ATACGAGAAG CGATATTGCG CGAAATATTA AGGGGAGGGC AAGTATTTTA CCTGCACAAT
AATGTACAAA CTATAGAAAG AGTTTGCCAG GATCTGGAAG CTTTAGTGCC CGAAGCAAAA
ATTCAAAGCG CACATGGGCA AATGCGAGAA AGGCAATTAG AGCGCATCAT GTCTGATTTT
TATCATCACC GATTTAATGT CCTGGTTTGC ACAACCATCA TTGAAACAGG GATCGATATT
CCAACGGCCA ATACCATTAT TATCGATCGT GCCGATAAAT TTGGATTAGC CCAGCTGCAT
CAATTACGTG GTCGTGTTGG ACGCTCTCAT CATCAAGCCT ACGCTTACTT ATTAACTCCC
AATGAAAAAC TGTTAACGCC AGATGCAGTG AAACGTCTCG AAGCCATTGT GTCTTTAGAA
GATTTGGGAG CAGGGTTCAC CTTGGCAACA CACGATCTGG AAATTCGTGG AGCAGGTGAA
CTCCTTGGTG AAGAACAAAG TGGTAATATG CATGCCATAG GATTTAATTT ATTTATGGAA
ATGCTTGACC GTGCCGTTAA CGATTTAAAG GCAGGTAAAA CTCCTGAATT GTCAGCACCA
ATGCATCAAG GACCTGAAAT TGACTTGAGA ATTAGCGCGA TTATCCCCGA AGATTACATA
GGTGATATAC ACAATAGACT CATCATGTAT AAAAGAATTG CTAATGCAAA AACTACCCAA
CAACTTAGAG AACTACAAAT AGAACTGATA GACCGGTTTG GTTTACTCCC ACAACCTGTC
AAACATCTGT TTTTGATTAC TGAATTAAAG TTAAAAGCAG CACAGCTCGG TATTCAAAAA
ATCAGTGCCA GTGCTCAACA AGGTAAATTG GATTTTAGTG AAAAACCATC GATTGACCCT
GGAACACTGA TTAGCTTAAT ACAAGTACAT GCCAAACGCT ATCAAATGGA AGGACCGCAA
CGTCTGCGTT TTACTCTAGA CAGCACGTCA GCAGAGGAAC GAATATTTGA AATCAGTTCT
TTATTAAATA AACTGTCTCC TCATTCCCAA ACGATTGACT GA
 
Protein sequence
MNTKTLLYQP TKNKQIWGQL YGSSLALALA EYCQQTPGIK LLITQDNLCA SQLQDELQFF 
LNPNQNTQEL LFFPDWETLP YDQFSPHQDI ISERLYTLSR VQQITNGIII SSASTLMHRL
SPPEFLNQYA LMLKEGQKLD LNSFRNQLQQ AGYHCVNKVL EHGEYALRGS IIDVYPMGSG
LPFRIELFDD EIESLREFDP ETQRTIEKIN QIHLLPAREF PLNEQSQLHF RRAFRESFPG
NPSHCPIYEA ISNSQFPSGI EYYLPLFFDK TVTFFDYLPA NAKICLIEET QENAERFWRE
LNERYEQRRH DVSRPILTPD NCFINPTELL TKANNYEQVR LYHKPSEKKG ALNFNIAKAP
QLPIDRKNIE PLRQLSEYCS DPTRRYLIVV ESAGRREVLL DLLKSSHIIP RTQNSWLDFI
YDESPINITT GPLIYGCELT DKQIVIIVES QLFGEQSTPQ RRSTQKSVDP DLIIRDMAEL
RLGAPVVHLQ FGVGRYQGLQ YIDSNGTPSE FLVLAYAGDD KIYVPVTSLH MISRYTGVDS
EHAPLHKLGS DQWQKEKKKA AEKIHDVAIE LLDLYAKREA QPGHQYDFNQ SEYIKFASGF
PFTETPDQLQ AIEQIIRDMQ SPRPMDRLIC GDVGFGKTEV AMRAAFVAVQ NGKQVCILAP
TTLLAGQHFE SFRDRFAEFP VNIELLSRFR SNKESEAVLA ALQSGKVDIV IGTHKLFQNN
ISFKNLGLLI IDEEHRFGVK QKEHIKSLRT HVDILSMTAT PIPRTLNMAM AGIRDISLIA
TPPAKRLAIK TFWQEKNDLT IREAILREIL RGGQVFYLHN NVQTIERVCQ DLEALVPEAK
IQSAHGQMRE RQLERIMSDF YHHRFNVLVC TTIIETGIDI PTANTIIIDR ADKFGLAQLH
QLRGRVGRSH HQAYAYLLTP NEKLLTPDAV KRLEAIVSLE DLGAGFTLAT HDLEIRGAGE
LLGEEQSGNM HAIGFNLFME MLDRAVNDLK AGKTPELSAP MHQGPEIDLR ISAIIPEDYI
GDIHNRLIMY KRIANAKTTQ QLRELQIELI DRFGLLPQPV KHLFLITELK LKAAQLGIQK
ISASAQQGKL DFSEKPSIDP GTLISLIQVH AKRYQMEGPQ RLRFTLDSTS AEERIFEISS
LLNKLSPHSQ TID