| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BMAA0981 |
|---|
| Symbol | pcaH |
|---|
| ID | 3086308 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia mallei ATCC 23344 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_006349 |
|---|
| Strand | - |
|---|
| Start bp | 1002377 |
|---|
| End bp | 1003081 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637564883 |
|---|
| Product | protocatechuate 3,4-dioxygenase, beta subunit |
|---|
| Protein accession | YP_105657 |
|---|
| Protein GI | 53716653 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
|---|
| TIGRFAM ID | [TIGR02422] protocatechuate 3,4-dioxygenase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00626299 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTCCT CGACCCTCGC GCCGCGCGAC TGGCCGTCGC ATCCCGCGTA CATTCATCCG
CCGTACCGCT CTTCCGTGAA GCGCGGCCCG ACGCAGCCGC TGATTCCGCT GAAGGAGACG
CTGCGTAACC AGCACGCGCC CGTCTACGGC GCGGACGATC TCGGCGCGCT CGACCACGAT
CTGACGAAGA ACGCGGCGAA GAACGGCGAG CCGCTCGGCG AGCGGATCGT CGTCACGGGC
CGTGTGCTCG ACGAGGGCGG CAAGCCGGTG CGCGACACGC TCGTCGAGGT CTGGCAGGCG
AACGCCGCGG GCCGCTACGT GCACAAGGTC GACCAGCACG ACGCGCCGCT CGACCCGAAC
TTCCTCGGCG CGGGCCGGTG CCTGACCGAC GCGAACGGCC GCTATCGGTT CCTCACGATC
AAGCCGGGCG CGTATCCGTG GGGCAACCAT CCGAACGCCT GGCGGCCGAA CCATATCCAT
TTCTCGTTGT TCGGCGACTA CTTCGGCTCG CGGCTCGTCA CGCAGATGTA TTTCCCGGGC
GATCCGCTCC TCGCGCTCGA CCCGATCTTC CAGGGCACGC CCGAGGACGC GCGCGAGCGG
CTGATCTCGC GCTTCTCGAT CGACACGACC GAAGAAGGCT TCGCGCTCGG CTACGAATTC
GACATCGTGC TGCGCGGCCG CGACGCCACC CCGATGGAGC GCTGA
|
|---|
| Protein sequence | MDSSTLAPRD WPSHPAYIHP PYRSSVKRGP TQPLIPLKET LRNQHAPVYG ADDLGALDHD
LTKNAAKNGE PLGERIVVTG RVLDEGGKPV RDTLVEVWQA NAAGRYVHKV DQHDAPLDPN
FLGAGRCLTD ANGRYRFLTI KPGAYPWGNH PNAWRPNHIH FSLFGDYFGS RLVTQMYFPG
DPLLALDPIF QGTPEDARER LISRFSIDTT EEGFALGYEF DIVLRGRDAT PMER
|
|---|
| |