Gene BMAA0454 details

Gene Information

• Locus tag: BMAA0454
• ID: 3087973
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia mallei ATCC 23344
• Kingdom: Bacteria
• Replicon accession: NC_006349
• Strand: +
• Start bp: 455875
• End bp: 459318
• Gene Length: 3444 bp
• Protein Length: 1147 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 637564373
• Product: hypothetical protein
• Protein accession: YP_105229
• Protein GI: 53716505
• COG category: [S] Function unknown
• COG ID: [COG3523] Uncharacterized protein conserved in bacteria
• TIGRFAM ID: [TIGR03348] type VI secretion protein IcmF

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.141895
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGGGCCGC TGTTCGCGTT CGGCATCTAT CACCCGCTCG GCCCGGTGTG GGTGCGCGAG 
ATCCTCGTCG CACTGGTGCT GATCTGGGGC TTCTGGCCGA CGCTCGCGCG GCTCTGGGCG 
CGGCTCGCGA TGAGCCCGCG GCAGGTGAAG GTCGCGCCGA AGGCCAAGCA GCTCGATTTC 
GTCGACAAGC ATCTGCGCAC CCTCGACCAG CAGTTGAAGG AGCGCTGGCG CAAGGAGCCG 
CGCGGCCGCT GGAAGCGCTG GGTCGGCGCG CTCACGCGCG AGCATCGCAC GATGCTGCCG 
TGGTATCTGG TGCTCGGCTC CGAGGGTAGC GGCAAGTCGA GCCTCGTCGC GAAGGCGGTG 
AGCGTGTCCG GCTCGCTGCA GGACCGGGTG CTCGGCTCGG ACGCGACCTA CGGGCGCGGC 
GACGACTTGA ACTTCCGCAT CACGCGCGAG GCGGTGTGGT TCGACGTCGG CGGCCGCTGG 
AGCCTGCGCG CGGGTGCCGA CGAGGCCGAG TTCGACGCGT GGCGCAAGCT GCTGCGCGGG 
ATGAGGCGGC TGCGCAGGGG CGCGCCGATC AGCGGCGTCG TGCTGTGCGT CGACGGCCTC 
GAGATGATCG ATGCGCCGCT CGACGCGCGC AAGCGGCTGG CCGATTCGGT GCGCGCGCGG 
CTCGAGGAGA TGCGCGAGGC GTTCGGCCAG CAGGTGCAGG TGTACGTTGC GCTGAACGGG 
CTCGACCGGC TCGACGGCGC GGTCTCGACG CTGTCGCTGC TCGAGGCGTC GAAGTGGGTC 
AAGGGCGTGG GCTTCAGCCT GCCCGACGAC GGCGCGCACG CCGACGCCGC GCGCGCGGAC 
GCGAGCTGGC AGCACGCGCT GCAAGGGCTG CAGCAGCGGG TCCAGCAGCA GGTGCTGTAT 
TCGGCGCCGG CGGCGACCGA GGTGTCGATG AACCACGCGC AGTTGCGCTT CGTCGAGACG 
CTCAGCCGCC TGCAGAAGGG GCTCGTCGCG TGGCTGCACG TCGCGCTCGC GCCGGGCGAG 
CCGCACACGG CCGCGCGGCT GCGCGGGGTG TGGCTGGGCT CGATGGCCGA GCTCGCGGAG 
CCGCATCCGG CGGGCGCGGG CGGCGTCGGC TCGGCGGAGC TGCCCGTGCC GTCGCGCCCG 
CTCAGCGAGC TGTGGACGCC GCTCATCCGG CAGGTGGCGC TCGAGCGCGA CGCGGTGCGC 
CCGAGCGGGC CGAAGTCGTG GCGCGGGCGC CTGGGCGAGG CGCTGCGCTG GGGCGCGGTG 
CCCCTCGTCG CGTTGAGCCT GCTGCTGTGG TTCGGCTGGG GCTACGTCAC CGAGCGCGAC 
TATCTGGACG GCGTCTGGGC GCAGTTCACC GAGGCCAAGC GGCTCGCGCA GGCCGAGGCG 
TCCTACGGCA ACGACGGCGG CTCGACGCTC ATCGAGATCG CGAACCAGAT GCGCTATGCG 
CAACTGCAGG CCGAGGACGC CGCGCAGGGC ATGGCGACGC CGTACTTCGA GCACGGGCTC 
GTCGCGGAGA CCGCGCGCGA GACCTACTAC CGGCACTTGC AGAAGATGCT GATGCCGGAG 
TTGTACAACG AGGTGCGGCG CACGCTCGTG TCGCAGGTCG ACGGCAGCCC GGGCGACATC 
TACCAGACGC TGAAGGTCTA CCTGATGCTC TGCCGCCCCG CGCGGCGCTC GGCGGACGAC 
GTCGTGCGCT GGCTCGACGG CCGCTGGGAC GCGCTCTCGG GCGGGCAGTA CTCGGACGAC 
GACCGCCGCT CGCTGCTCGC GCACGTGCGC ACGCTGATGT CGCTGAAGGA GGTGCCGGCC 
ACGCCGGAGG ACGCGAACCT CGTGCGCTCG GCGCGCGCGA AGGCCGCGCA GATCCCGCTC 
GTCACGCGCG TGCTGCAGCA CATCCACGCG CAGGGGCTGC CGCAGCAGGT CAACGACATC 
TCGCTGTCGC GCGCGGCGGG CTTCGAGGCG TCGATGAGCC TGCGCATGCG CAGCAACGTG 
CCGTCGACCG ACACCGCGGT GTCGGGCTGG TTCACGCGCG CGGGCTACAC GGACGTGTTC 
CTGCCGCGCC TGCAGAAGAG CGCGCGCGCG ATGCTCGAGG AGGAGAGCTG GGTGCTGCGC 
GACGAGACGC TGTCGGGCAA CAGCTTCCAG ATCGACGGAC TCGTGCAGAA GCTCGCCGAT 
TCGGCGCGCA ACCAGTTCCT GCAGGACTAC ATCTCCGCGT GGCAGAACTT CCTGAACGAC 
GTGACGGTGC GCGGCGTGAC GGGCCTGGAC GATGCGTCGC AGCTCGCCGC GGCGATGATG 
GAGGCGCAAT CGCCGCTCGC GAACCTGCTG CGCTTCGCCG CGCGCGAGAC GACGCTCACG 
GGCGCGAGCG ACGAAGGCAA CATCGACAGC TGGATCGATC GCCAGAAGTA CCGCTTCGAG 
AAGGGGCGGC GGCAGGTCGT CGGCGAGCTG AGCGGGCAGC ATTACCGCAC GGTGCTGCTG 
CCGGAGCACG TGGTCGAGGA GCACTTCCAG GCGATCCGCC AGCTCGCCGC GCAACTGAAC 
CGCAACAACA CGATCGCGAA CAACCCGCTG TCGCGGCTGT TCGAGCCGCT GTACCGGCAG 
CTCGGGCTCG TCAACGGCGC GCTGCAGGCG GGCCAGGTGC TGCCCGCGCA GTACGACGCG 
TTCTCGCGGC TGAAGGAGAC GGCCGCGCGC CAGCCGGAGC CGGTGCGCGG GATCATGCTC 
GACCTCGTGA GCAGCGGCAG CACGATGACG ACGCGCGAAT CGGGCGCGCT GCTCAACCGG 
GGCGCGGCGG GCGCGACGAA GATGGTCTGC GATCAGGGCT TCACGGGCCG CTATCCGATG 
CGCCGCGGCG CGCAGGCGGA TGCGGGCGTG GAGGACTTCG AGCGGCTGTT CAGCGCGCAG 
GGGCTGATGG CGACGTACTT CCGCGATCAC CTCGCCGCGT ATGTGGACAC GTCGGCCAAG 
CCGTGGCAGG CGCTGCGCTC GAACGGCGGG CCGAACGGGA TGGTGAGCCA GTCGGTGCTG 
AACTCGTACG AGACGGCCGA GCGCATCCGC GGCGCGATGC TCGACGATTC GGGGCACCTG 
CGCGTGTCGA CCGTGCTGCG TTTCATCGAC ATGGATTCGC AGTTGTCCGA AGCGCAGCTG 
AGCGTGGCTG GGCAGACGGT GCGCTTCGCG CACGGCGTGA CCTCGCCGCA CCGGGTGGAC 
TGGACCAACC AGAACACGCA GCTCGCGATC AAGCTGCAGC TCAAATCGGT GGACGGCCGG 
ATGACGACGC TGCAGTTCGA CGGGCCGTGG GCGCTGTTCC GCTTCTTCGA CGCGGGGCAG 
GCGGTGGGCG GCACGGGCAC CGCGGACCGG CGCGAGCGGC TGTATCAGAC GAGCCTCGGC 
ACGGTGCGCA TCGAATGGCA GGCGCTCACG CTGCCGTCGC CGATATGGTC GGGCATCCTG 
CAGTCGTTCA GGTGTCCGTC GTGA 

 

Protein sequence

MGPLFAFGIY HPLGPVWVRE ILVALVLIWG FWPTLARLWA RLAMSPRQVK VAPKAKQLDF 
VDKHLRTLDQ QLKERWRKEP RGRWKRWVGA LTREHRTMLP WYLVLGSEGS GKSSLVAKAV 
SVSGSLQDRV LGSDATYGRG DDLNFRITRE AVWFDVGGRW SLRAGADEAE FDAWRKLLRG 
MRRLRRGAPI SGVVLCVDGL EMIDAPLDAR KRLADSVRAR LEEMREAFGQ QVQVYVALNG 
LDRLDGAVST LSLLEASKWV KGVGFSLPDD GAHADAARAD ASWQHALQGL QQRVQQQVLY 
SAPAATEVSM NHAQLRFVET LSRLQKGLVA WLHVALAPGE PHTAARLRGV WLGSMAELAE 
PHPAGAGGVG SAELPVPSRP LSELWTPLIR QVALERDAVR PSGPKSWRGR LGEALRWGAV 
PLVALSLLLW FGWGYVTERD YLDGVWAQFT EAKRLAQAEA SYGNDGGSTL IEIANQMRYA 
QLQAEDAAQG MATPYFEHGL VAETARETYY RHLQKMLMPE LYNEVRRTLV SQVDGSPGDI 
YQTLKVYLML CRPARRSADD VVRWLDGRWD ALSGGQYSDD DRRSLLAHVR TLMSLKEVPA 
TPEDANLVRS ARAKAAQIPL VTRVLQHIHA QGLPQQVNDI SLSRAAGFEA SMSLRMRSNV 
PSTDTAVSGW FTRAGYTDVF LPRLQKSARA MLEEESWVLR DETLSGNSFQ IDGLVQKLAD 
SARNQFLQDY ISAWQNFLND VTVRGVTGLD DASQLAAAMM EAQSPLANLL RFAARETTLT 
GASDEGNIDS WIDRQKYRFE KGRRQVVGEL SGQHYRTVLL PEHVVEEHFQ AIRQLAAQLN 
RNNTIANNPL SRLFEPLYRQ LGLVNGALQA GQVLPAQYDA FSRLKETAAR QPEPVRGIML 
DLVSSGSTMT TRESGALLNR GAAGATKMVC DQGFTGRYPM RRGAQADAGV EDFERLFSAQ 
GLMATYFRDH LAAYVDTSAK PWQALRSNGG PNGMVSQSVL NSYETAERIR GAMLDDSGHL 
RVSTVLRFID MDSQLSEAQL SVAGQTVRFA HGVTSPHRVD WTNQNTQLAI KLQLKSVDGR 
MTTLQFDGPW ALFRFFDAGQ AVGGTGTADR RERLYQTSLG TVRIEWQALT LPSPIWSGIL 
QSFRCPS