Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BMAA0339 |
Symbol | rpoD |
ID | 3087654 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia mallei ATCC 23344 |
Kingdom | Bacteria |
Replicon accession | NC_006349 |
Strand | + |
Start bp | 327125 |
End bp | 329167 |
Gene Length | 2043 bp |
Protein Length | 680 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637564264 |
Product | RNA polymerase sigma factor RpoD |
Protein accession | YP_105146 |
Protein GI | 53716429 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACGAAAA AGCTGAACGA AGTATCCGTC GATGACGACG CAAACCAGAG CGACGACCAG CCTACCGCTG CGTCGGGCAA AGGCGAAAAG GCCAAGGCGC GCGACCGTCG CGCCAAGGAA AAGGCGCTGC TGAAGGAAGC GTTCGCGACG AGCACGCCCG GCACGGCCGA GGAGCTCGAA GAGCGCCGTA CGAAGCTGCG CGCGCTGATC AAGCTCGGCA AGGAGCGCGG CTTCCTCACG TACGCCGAAA TCAACGACCA TCTGCCGGAC AACTTCACGG AAACGGAAGC GCTCGAAGGC ATCATCGGCA CGTTCAACGA CATGGGCGTC GCGGTGTACG AGCAGGCGCC CGACGCCGAG ACGCTGCTGT TGAACGACAA TGCGCCCGCC GCGTCGTCCG ACGATGAGGT CGAGGAGGAA GCGGAAGTCG CGCTGTCGAC CGTCGATTCC GAATTCGGCC GCACGACCGA TCCGGTGCGG ATGTACATGC GCGAGATGGG CACGGTCGAG CTGCTCACGC GCGAAGGCGA AATCGAGATC GCGAAGCGGA TCGAGGACGG CCTGCGCCAC ATGGTGATGG CGATTTCCGC GTGCCCGACG ACGATCGCCG ACATCCTCGC GATGGCCGAG CGCGTGGCGA ACGAGGAGAG CCGCGTCGAC GAGCTCGTCG ACGGCCTGAT CGATCCGAAC GCCGCCGATA CCGACGGCTT CTCGGAGAAG GACGCCGAGG AAATCGAGAA CGAGGACGCG GAAGCCGAAG AGGACGACGA AGAGGAAGAA GAGGACGACG ACGGCGCCGC GCAGGCGACC GCCAACGCGG CCCAGCTCGA AGCGCTCAAG CGCGCGTCGC TCGAGAAGTT CGCGCTCATC AGCGAATGGT TCGACAAGAT GCGCCGCGCG TTCGAGAAGG AAGGCTACAA GTCGAAGTCG TACCTGAAGG CACAGGAAAC GATCCAGAAC GAGCTGATGT CGATCCGCTT CACCGCGCGC ACCGTCGAGC GCCTGTGCGA TACGCTGCGC GCGCAGGTCG ACGAAGTGCG CCAGGTCGAG CGTCAGATCC TGCACATCGT CGTCGACAAG TGCGGGATGC CGCGCTCGGA GTTCATCGCG CGCTTCCCGG GCAGCGAGAC CGATCTCGAC TGGGCCGAGA AGGTCGCGGC CGAAGGCCAT TCGTATGGGG CGATCCTGTC GCGCAACATT CCGGCGATCC GCGAACAGCA GCAGCGCCTG CTCGACCTGC AGGCGCGTGT CGTGCTGCCG CTCAAGGACC TGAAGGAAAC CAACCGCCAG ATGGCGGCGG GCGAACTGAA GGCGCGCCAG GCGAAGCGCG AGATGACCGA GGCGAACCTG CGCCTCGTGA TCTCGATCGC GAAGAAGTAC ACGAACCGCG GCCTGCAGTT CCTGGACCTG ATTCAGGAGG GCAACATCGG CCTGATGAAG GCGGTGGACA AGTTCGAATA CCGTCGCGGC TACAAGTTCT CGACGTATGC GACGTGGTGG ATCCGCCAGG CCATCACGCG CTCGATCGCG GACCAGGCGC GCACGATCCG GATTCCGGTT CACATGATCG AGACGATCAA CAAGATGAAC CGCATCTCGC GGCAGATCCT GCAGGAAACC GGCCTCGAGC CGGATCCGGC GACGCTCGCC GAGAAGATGG AGATGCCGGA GGACAAGATC CGCAAGATCA TGAAGATCGC GAAGGAGCCG ATCTCGATGG AAACGCCGAT CGGCGACGAC GACGATTCCC ATCTCGGCGA CTTCATCGAG GACACCAACA CGGTCGCGCC GGCGGATGCC GCGCTGCATG CGAGCATGCG CGACGTCGTG AAGGACGTGC TCGATTCGCT GACGCCGCGC GAGGCGAAGG TGCTGCGGAT GCGTTTCGGC ATCGAGATGA GCACCGATCA CACGCTCGAG GAAGTCGGCA AGCAGTTCGA CGTCACGCGC GAGCGGATTC GTCAGATCGA GGCGAAGGCG CTGCGCAAGC TGCGTCATCC GAGCCGTTCG GACAAGCTGA AGTCGTTCCT CGAGGGGAAC TGA
|
Protein sequence | MTKKLNEVSV DDDANQSDDQ PTAASGKGEK AKARDRRAKE KALLKEAFAT STPGTAEELE ERRTKLRALI KLGKERGFLT YAEINDHLPD NFTETEALEG IIGTFNDMGV AVYEQAPDAE TLLLNDNAPA ASSDDEVEEE AEVALSTVDS EFGRTTDPVR MYMREMGTVE LLTREGEIEI AKRIEDGLRH MVMAISACPT TIADILAMAE RVANEESRVD ELVDGLIDPN AADTDGFSEK DAEEIENEDA EAEEDDEEEE EDDDGAAQAT ANAAQLEALK RASLEKFALI SEWFDKMRRA FEKEGYKSKS YLKAQETIQN ELMSIRFTAR TVERLCDTLR AQVDEVRQVE RQILHIVVDK CGMPRSEFIA RFPGSETDLD WAEKVAAEGH SYGAILSRNI PAIREQQQRL LDLQARVVLP LKDLKETNRQ MAAGELKARQ AKREMTEANL RLVISIAKKY TNRGLQFLDL IQEGNIGLMK AVDKFEYRRG YKFSTYATWW IRQAITRSIA DQARTIRIPV HMIETINKMN RISRQILQET GLEPDPATLA EKMEMPEDKI RKIMKIAKEP ISMETPIGDD DDSHLGDFIE DTNTVAPADA ALHASMRDVV KDVLDSLTPR EAKVLRMRFG IEMSTDHTLE EVGKQFDVTR ERIRQIEAKA LRKLRHPSRS DKLKSFLEGN
|
| |