| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BMA3260 |
|---|
| Symbol | dapF |
|---|
| ID | 3088149 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia mallei ATCC 23344 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_006348 |
|---|
| Strand | - |
|---|
| Start bp | 3369650 |
|---|
| End bp | 3370519 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637563814 |
|---|
| Product | diaminopimelate epimerase |
|---|
| Protein accession | YP_104734 |
|---|
| Protein GI | 53724459 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0253] Diaminopimelate epimerase |
|---|
| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTCT CGTTCACCAA GATGCACGGC GCGGGCAACG ACTTCGTCGT GCTCGACGGC
TACACCCGCG CGCTGCCCCC GCTCACCGGC GCGCAGGTGC GCGCGCTCGC CGACCGCCAC
TTCGGGATCG GCGCCGATCA GTTGCTGCTC GTCGAAAAGC CGACCGTCGA CGGCGCCGAT
TTCAAATACC GGATCTTCAA CTGCGACGGC GGCGAAGTCG AGCACTGCGG CAACGGCGCG
CGCTGCTTCG TCAAGTTCGT CCGCGACCAC GGGCTCACCG GCAAGGCGAG CGTGCGCGTC
GAGGTGAAGC ACGGCGTGAT CACGCTGACG ATGCAGGACA ACGGCGAGGT CGTCGTCGAC
ATGGGCGCGC CCGTGTTCGA GCCGGCGCGC GTGCCGTTCG ACGCGAGCGG CCTCGACGGC
CGCCGCGAGG GCGCCGACAC GCTCTGGCCG CTGCCCGTGA ACGGCGTGAC GCGCTGGATC
TCGGTCGTGT CGATGGGCAA TCCGCACGCG GTGCAGATCG TCGACGACGC CGAGGCGTTC
GCGGTGCGCG TCGACGGGCC GGCGATCGAG CGCGATCCGC GTTTCCCGCA GCGCGTGAAC
GCGGGCTTCA TGCAGATCGT GTCGCGTCAC GAAGTGAACC TGCGCGTCTA CGAGCGCGGC
GCGGGCGAAA CGCTCGCGTG CGGCACGGGC GCGTGCGCGG CCGTCGCGGC CGGCATCCGG
CGCGGGCGAC TCGATTCGCC CGTCACGGTC CATACGCACG GCGGCACGCT GACGATCTCG
TGGAACGGCG CGTGCGACGA GCGCGCGCCG CTCATGATGG CCGGCCCCGC GACCACCGTC
TTCGAAGGCG TGATCGAGCT GCCCGCCTGA
|
|---|
| Protein sequence | MKLSFTKMHG AGNDFVVLDG YTRALPPLTG AQVRALADRH FGIGADQLLL VEKPTVDGAD
FKYRIFNCDG GEVEHCGNGA RCFVKFVRDH GLTGKASVRV EVKHGVITLT MQDNGEVVVD
MGAPVFEPAR VPFDASGLDG RREGADTLWP LPVNGVTRWI SVVSMGNPHA VQIVDDAEAF
AVRVDGPAIE RDPRFPQRVN AGFMQIVSRH EVNLRVYERG AGETLACGTG ACAAVAAGIR
RGRLDSPVTV HTHGGTLTIS WNGACDERAP LMMAGPATTV FEGVIELPA
|
|---|
| |