| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BMA1350 |
|---|
| Symbol | rumA |
|---|
| ID | 3089537 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia mallei ATCC 23344 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_006348 |
|---|
| Strand | - |
|---|
| Start bp | 1409790 |
|---|
| End bp | 1411187 |
|---|
| Gene Length | 1398 bp |
|---|
| Protein Length | 465 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637562057 |
|---|
| Product | 23S rRNA 5-methyluridine methyltransferase |
|---|
| Protein accession | YP_103010 |
|---|
| Protein GI | 53723555 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0719078 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGGCG CGTGGAGAGG GGGACGGCTT CTGACACCAG CTTTTCCTGA CGAACGATTG
TGGGGGAAAG GCGAGATTGT AGACGAACGC CCGCCAAGCA ACGGAGATTC GACGATGCGA
CTCATCAGTT GGAACGTCCA ATGGGGACGG GACGCGAACG GAACGGTCGA CCTCGCGCGC
ACCGTCGACG CCGCACGCGG CCTCGGCGAT TTCGACGTGC TGTGCGCGCA GGAGCTCACA
CGCGGCTTTC ACGCGCTGCC GGGCGGCCCA AGCGGCGATC AGTACGCCGA GCTGGCCGCG
CTCCTGCCGG GTTACGCGGT ATTCGACGCG ATCGGCGTCG ATCTGCCGCC GCTCGAGCCG
GGCGCGCCGC GCCGGCAATT CGGCAACGCG CTCGCCACGC GGCTGCCCGT CGAGCGCGCC
CTGCGCCACG CGTTGCCGTG GCCGGCGAGC GCCGCCGCGC CGTCGATGCC CCGCTGCGCG
CTCGAAGTCA CGCTGCGCGC GCCGTTCGGG CCGCTGCGCG TCGTCGTCAC GCATCTCGAA
TACTATTCGG CGCAGCAGCG GCTCGCACAA GTCGACGCGC TGCGGCGCCT GCATCGCGAG
GCGGCCGCGC ATGCGCGCGC GAGCGCGCCG CCGGAAACGC CGGCAAGCCC GTTCGCGCCG
TCGGCGCGCG CGGCCGACGC CATCGTCTGC GGCGACTTCA ACAGCGCGTA CCGCAGCGAC
GCGTACCGGC GCTTTCTCGC GCCGTTTCCC GATGCGCCGC GCTTCGTCGA CGCCTGGCTC
GCGCGCCATC CGGGAAAGAC GCCGCCGATG ACGGCGGGCG TCTACGACAC CGCGCAATGG
AGCGAGGGGC CGATGACGTG CGACTTCGCG TTCGTCACCG ATACGCTCGT TCGCCGCCTA
TCGCGCTGCG AAATCGACGG GACGGTGCGT GCGTCCGATC ATCAGCCGAT CGTGCTCGAA
TTGAGCGACG CATAG
|
|---|
| Protein sequence | MSEAVPLSTR RASSAGDAPG RAPVLDIDSL DMEARGVGRV VDENGEPGKV IFVEGALPGE
RVTYSSFRRK PTYEQAQVVD ILRPSVMRTQ PKCAFFGTCG GCSMQHLDMR AQVAIKQRVL
EDNLWHLAKL RAEAMFAPIH GPSWGYRYRA RLTVRHVAKK GGVLVGFHEK KSSYVADMTS
CEVLPPHVSA MLVPLRRLVE QLSIRDRMPQ IELAVGARVT ALVLRVLEPI NAADEALLRE
FADTHRVQFW LQPKGPDTVA PFYPLDAQLD YTLPEFGIRM PFKPTDFTQV NHQINRVLVG
RALRLLAPER GDRVLDLFCG IGNFTLPLAR LAREVVGIEG SDALTARALE NAKENGVDGH
TSFACRNLFE VTADDLRALG AFDKFLVDPP REGALAVSKA LAEIAQSGAG PLPARIVYVS
CNPSTLARDA GLLVHEAGYR LKGAGVVNMF PHTSHVESIA LFERD
|
|---|
| |