Gene BMA1301 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBMA1301 
SymbolpotF 
ID3089417 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia mallei ATCC 23344 
KingdomBacteria 
Replicon accessionNC_006348 
Strand- 
Start bp1351990 
End bp1353084 
Gene Length1095 bp 
Protein Length364 aa 
Translation table11 
GC content63% 
IMG OID637562009 
Productputrescine ABC transporter, periplasmic putrescine-binding protein 
Protein accessionYP_102962 
Protein GI53723535 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0687] Spermidine/putrescine-binding periplasmic protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.803761 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGGCAA AGGTGGCGGG CCGGTTGACG GCACTTGCGC TCTGCGCGGG CGCGACGGTG 
GCGGCGGCGA AGGATACGCA GCTCAACGTC TATAACTGGT CGGACTACAT TGCGAAGGAC 
ACGATCCCGA ACTTCGAGAA GCAGACGGGC GTCAAGGTCC GCTACGACAA CTACGACAGC 
GACGACACGC TGCAGGCGAA GCTTTTGACC GGCAACTCGG GCTACGACAT CGTCGTGCCG 
ACGGGCAACT ACGCGGGCAA GCAGATCCAG GCCGGCATCT TCACGCCGCT CGACAAGTCG 
AAGCTGCCGA ACCTCAAGTA TCTCGATGCG CAACTGATGG CGCTCGTCGC GGGCGCCGAT 
CCGGGCAACA AGTACGTGGT GCCCTGGGCA TATGGCACGA CGGGCCTCGG CTACAACGTC 
GACAAGGCGC AGAAGGTGCT CGGCAAGGTG CCGCTCGACA ACTGGGACAT CCTGTTCAAG 
CCGGAGAACC TCTCGAAGCT GAAGACGTGC GGCGTGTCGG TGCTCGACGC GCCGGACCAG 
ATGTTCGCGG CGACGCTGCA CTACATCGGC AAGGATCCGA TGAGCACGAA CCCGGCCGAC 
TACCAGGCTG CGATGCAGGT GCTCAAGAAG ATCCGCCCGT ACATCACGCA GTTCAACTCG 
TCGGGCTACA TCAACGACAT GGTCGGCGGC GACATCTGCT TCGCGTTCGG CTGGTCGGGC 
GACGTCGTGA TCGCGAAGCA CCGCGCGCTC GAGGCGAAGA AGCCGTACAA GCTCGAGTAC 
TACGTGCCGA AGGGCGGCGC GCCCGTATGG TTCGACGTGA TGGCGATCCC GAAGGACGCG 
AAGAACAAGG ACGCCGCGCT TCAATGGATC AACTACATCG AGGATCCGAA GGTTCACGCG 
TCGATCACGA ACGCGGTCTA CTACCCGAGC GCGAACGCGC AAGCGCGCAA GTACGTGCGC 
CCGGATGTCG CGAACGACCC GGCCGTGTAC CCGCCTCCGG ACGTCGTGAA GACGCTGTTC 
CTGCTCAAGC CGCTGCCGCC CGAGATCCAG CGCCTGCAGA CGCGTCTTTG GACCGAGCTG 
AAATCGGGAC GCTGA
 
Protein sequence
MKAKVAGRLT ALALCAGATV AAAKDTQLNV YNWSDYIAKD TIPNFEKQTG VKVRYDNYDS 
DDTLQAKLLT GNSGYDIVVP TGNYAGKQIQ AGIFTPLDKS KLPNLKYLDA QLMALVAGAD 
PGNKYVVPWA YGTTGLGYNV DKAQKVLGKV PLDNWDILFK PENLSKLKTC GVSVLDAPDQ 
MFAATLHYIG KDPMSTNPAD YQAAMQVLKK IRPYITQFNS SGYINDMVGG DICFAFGWSG 
DVVIAKHRAL EAKKPYKLEY YVPKGGAPVW FDVMAIPKDA KNKDAALQWI NYIEDPKVHA 
SITNAVYYPS ANAQARKYVR PDVANDPAVY PPPDVVKTLF LLKPLPPEIQ RLQTRLWTEL 
KSGR