Gene BMA0952 details

Gene Information

• Locus tag: BMA0952
• ID: 3089219
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia mallei ATCC 23344
• Kingdom: Bacteria
• Replicon accession: NC_006348
• Strand: -
• Start bp: 1001359
• End bp: 1003263
• Gene Length: 1905 bp
• Protein Length: 634 aa
• Translation table: 11
• GC content: 74%
• IMG OID: 637561718
• Product: RND efflux system outer membrane lipoprotein
• Protein accession: YP_102677
• Protein GI: 53725405
• COG category: [M] Cell wall/membrane/envelope biogenesis; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1538] Outer membrane protein
• TIGRFAM ID: [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGCGTTT CGATTCCTTC GCTCCCGAGT CTCGCGCCGC GCGCGCTCGC CGCGGCCGCC 
GCCATCGCGT TCGCGGGCGC GCTCGCCGGC TGCTCGCTGT TCGCGCCGAG CGACGCACCG 
CCCGCGATGC CGTCGCCCGC GCACTACGGC GCGACACCGC TGCCCGAGCG CACGGCCGCC 
GCGCAGGGGC TCGCGCAACG CTTTGACGTG GGCGCGCAGC CGGTGCCCGA CTGGTGGAAG 
CGCTATCGCT CGCCCGCGCT CGACGCGCTC GTCGACGAAG GGCTGCGCAA CAGCCCGACG 
CTCGCCGCCG CCGAAAAGAG CCTGAGCGCC GCGCGCGAAC AGTTGCGCGC GCAGATCGGC 
AGCTCGCTGC TGCCGACGAT CGACGCCGGC GGCCAGGCGA CGCGCGAGCG CGCGCTCGGC 
ATGCCGGCGT TCGGCCCGCA GACGGTGCTC TACAACGTGT TCGCGGGCCA GTTGCAGGCG 
AGCTACACGC TCGATCTGTT CGGCGCCGCG CGTTTCGCGA ACCGCGCGCT GTCCAAGCGC 
GTCGACGTGA ATGCGTACCA GCTCGAATCC GCGCGGCGCG CGCTCGCCGC GAACATCGTG 
ACGGCCGCCG TCACATCGGC CGCGCTCGCC GAGCAGGTCG CGACGACCGA GCGGCTCGTC 
GCGCTCGCGC GCGAACAGGC GAGCGACGCG GCCGCGCGCC ACCGGCTCGG CGCGGCGTCG 
CGCACCGACA TGCTGAACAC GCGGCAAAGC GCGGCGGCGC TCGAGGCGAG CCTGCCCGCG 
CTGCGCCAGC AAGCGCAGAG CGCGCGCCAT GCGCTTGCCG TGCTGCTCGG CCGCACGCCG 
GATGCCGCGC CCGCGAATCT CGCGCTCGCC GATCTGCATC TGCCGCAGGA CGTGCCGGTC 
GTCGTGCCGT CGACGCTGCT GCAGGCGCGG CCCGACATCC GCGCGGCCGA GGCCGGCTTG 
CAGGCTGCGG CGGCCGAGGT CGGCGTCGCG ACCGCGCAGA TGTTCCCGCA GTTGTCGCTG 
TCCGCGTCGA TGGGCCATGC GGGCTTCAAG TGGCCGGCGA TGCTGTCGGG CGCGGGCGCG 
ATCTGGAGCG TCGGCGCATC GCTCACGCAG CCGCTCTTTC ACGGCGGCGC GCTGCTCGCG 
CAGCGCCGCG CGGCGCGCGC GAGCTACGAC GCGGCCGTCG ACCAGTACAA GCAGACGGTG 
CTCGCCGCCT TCCAGGATGT GGCCGACAAG CTCGCCGCGC TCGAGAACGA CGCGAGCGCG 
CTCGACGCGT CGAACCGCTC GGCCGTCGCC GCGCGCGGCG CGTTCGACGA CACCGCGGCG 
CGCGTGCGGC TCGGCGCGCT GCCGCCGTCG GCCGCGCGCG CGAGCGAGCA GCAGTACCGC 
AACGCGCGGC TCGACGAGAT CCGCGCGACG GGCACGCGGC TCGTCGATAC CGCGCGGCTC 
TTTCAAGCGA TGGGCACGCC GATCGACGGC GGGCCGGATG CGCGGCGTGT GGGCGGTATG 
AGCGGCTCGA ATGATGTGAG TGACGTAAGT GGATCGAGTG GTGTCGGCGG TGCGCACCGC 
GTGATCGACG TACACGAAGC CGGTGCGGCG CAGTGTGCGG ACGACGCGAA GCGGACCGGC 
GACGCGCGCA TGCTTCGCGC GAACGGCAAG ACCGAGGCGG CGCAAGCTTC CGTGACGGCG 
AGCGCGGCCG CCGATGCGCC GGCCGCGCCC GCCCCGGCGG CTGCCGCCAG CGGCGCGAAC 
GCGATACGGA TACAGGCGCG AACGCCACCG ACCGCCGGCC CGTCCGCCGG CGCGATCGAC 
GGCTCGATCG ATGCGGCAAG CGCAACCGGC GCGACGAGCA CGGCCCGCCC GGCAAACGGG 
CGCGACACGA CGGTCGAATC GAACCCAACG CATTCGCCGA GCTAA 

 

Protein sequence

MRVSIPSLPS LAPRALAAAA AIAFAGALAG CSLFAPSDAP PAMPSPAHYG ATPLPERTAA 
AQGLAQRFDV GAQPVPDWWK RYRSPALDAL VDEGLRNSPT LAAAEKSLSA AREQLRAQIG 
SSLLPTIDAG GQATRERALG MPAFGPQTVL YNVFAGQLQA SYTLDLFGAA RFANRALSKR 
VDVNAYQLES ARRALAANIV TAAVTSAALA EQVATTERLV ALAREQASDA AARHRLGAAS 
RTDMLNTRQS AAALEASLPA LRQQAQSARH ALAVLLGRTP DAAPANLALA DLHLPQDVPV 
VVPSTLLQAR PDIRAAEAGL QAAAAEVGVA TAQMFPQLSL SASMGHAGFK WPAMLSGAGA 
IWSVGASLTQ PLFHGGALLA QRRAARASYD AAVDQYKQTV LAAFQDVADK LAALENDASA 
LDASNRSAVA ARGAFDDTAA RVRLGALPPS AARASEQQYR NARLDEIRAT GTRLVDTARL 
FQAMGTPIDG GPDARRVGGM SGSNDVSDVS GSSGVGGAHR VIDVHEAGAA QCADDAKRTG 
DARMLRANGK TEAAQASVTA SAAADAPAAP APAAAASGAN AIRIQARTPP TAGPSAGAID 
GSIDAASATG ATSTARPANG RDTTVESNPT HSPS