Gene BMA0520 details

Gene Information

• Locus tag: BMA0520
• Symbol: rne
• ID: 3090951
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia mallei ATCC 23344
• Kingdom: Bacteria
• Replicon accession: NC_006348
• Strand: -
• Start bp: 545945
• End bp: 549217
• Gene Length: 3273 bp
• Protein Length: 1090 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 637561353
• Product: ribonuclease E
• Protein accession: YP_102317
• Protein GI: 53725727
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1530] Ribonucleases G and E
• TIGRFAM ID: [TIGR00757] ribonuclease, Rne/Rng family

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.000787566
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACGCA TGCTGTTCAA TGCGACGCAG CAGGAAGAAC TGCGCGTCGC CATCGTCGAT 
GGGCAGAAGC TCATCGATAT CGATATCGAA ACCGCCGGCC GCGAACAGCG CAAAGGCAAC 
ATCTACAAGG GCGTCGTCAC CCGCATCGAA CCGTCGCTCG AAGCCTGCTT CGTCAATTAC 
GGCGAAGACC GCCACGGCTT CCTGCCGTTC AAGGAAGTCG CCCGCCAGTA CTTCAAGGAA 
GGCGTCGACA TGCGCTCCGC GCGCATCCAG GACGCGCTGC GCGAGGGCCA GGAGCTGATC 
GTCCAGGTCG AGAAGGAAGA GCGCGGCAAC AAGGGCGCGG CGCTTACCAC CTTCATCTCG 
CTCGCCGGCC GCTACCTCGT GCTGATGCCG AACAACCCGC GCGGCGGCGG CGTGTCGCGC 
CGCATCGAGG GCGACGAGCG CCAGGAACTG CGCGAGACGA TGGCGCAACT GCAGATCCCC 
GACGGCATGA GCATGATCGC CCGCACCGCG GGCATCGGCC GCAGCGCCGA GGAACTGCAG 
TGGGACCTGA ACTACCTGCT GCAGCTCTGG CGCGCGATCG AGGCGGCGTC GCAAAGCGGC 
CACCCCGGCC AGCCGATGCT GATCTACCTC GAATCGAGCC TCGTGATCCG AGCGATCCGG 
GACTATTTCC AGCCGGACAT CGGCGAAATC CTGATCGACA CGACCGAGAT CCACGATCAG 
GCGCGCGCGT TCATGGACAT CGTGATGCCC GACAACGTCG GCAAGGTGAA GCGCTATCAC 
GACGACGTGC CCCTCTTCTC GCGCTTCCAG ATCGAGCACC AGATCGAAAC CGCGTACTCG 
CGCACGGTGC CGCTGCCGTC GGGCGGCGCG ATCGTGATCG ACCACACCGA GGCGCTCGTC 
GCGATCGACG TGAACTCGGC GCGCGCGACC AAGGGCGCGG ACATCGAGGA AACGGCGACC 
CGCACGAACC TCGAGGCGGC CGACGAAGTC GCCCGCCAGT TACGTCTGCG CGACCTGGGC 
GGCCTGATCG TGATCGACTT CATCGACATG GAATCGGCCA AGAGCCAGCG CGAAGTCGAG 
CAGCGCCTGA AGGACGCGCT CAAGCACGAC CGCGCGCGCG TGCAGATGGG CAAGATCTCG 
CGCTTCGGCC TGATGGAGCT GTCGCGCCAG CGCCTGCGCC CAGCCCTGTC CGAAGGCAGC 
CACGTCACCT GCCCGCGCTG CAACGGCACG GGCCACATCC GCGACACCGA ATCGTCCGCG 
CTGCAAGTGC TGCGGATCAT TCAGGAAGAA GCGATGAAGG AGAACACCGC GGCGATCCAC 
TGTCAGGTGC CCGTCGAGGT GACGGCCTTC CTGCTCAACG AGAAGCGCCA GGAAATCAAC 
AAGATCGAAT CGCGCTTCAA GGTCGGCGTC GTGCTGATTC CGAACAAGCA CCTCGATACG 
CCGCACTACA AGCTCGAGCG CCTGCGTCAC GACGATGCGC GCCTCGACGA TCCGCGCGCA 
TCGTGGAAGA TGGCCGAGGA AGCCGCCCGC GAGCTCGAGG CGGAAACCGG CTACAGCAAG 
CGCGCCGAGG AAACGAAGCC GCGCCAGGAA GCGGCCGTCA AGGGCATCAC GCCCGAGCGG 
CCGGCGCCGA GCCCCGCGCC GCAGCGCCAG AGCGCGCCGG AAGCGGCGGC GCCCGTGGCC 
GCCGCGCCCG CGAGCGGCGG CGGTTTCATG AAATGGCTGA AGGGCCTGTT CGGCGCGCAG 
CCGGCTGCGG TGCCCGCACC GGCGCCCGCC GCGCAGGAAA CGGCTGCGCG TCCGGCGCGC 
GAGCGCGCGG AGCGTGGTGA GCGCGGCGAG AAGGCCGAGC GCGGCGAACG CGGCGGCGAT 
CGCAACCGCA ACCGCCGCGG CGGCGCCGCG CAGCAGGGGG GTGGACGCGA CCAGGCGGCG 
GCAGGCGGCG GCCGCGCTCA GGCGCCGCGC GCCGAGCGCG AAGGCAAGGA AACCCGCGAG 
CCGCGCGAAG GCCGCGAAGC ACGCGGCGGC CGGGACAACC GGGAAGGCCG CGAGGCGCGC 
GAAACCCGCG AGGCGCGCGA GCCCCGTGAA CAACGCGAGC CGCGCGAGGC ACGCGAGCAG 
CGCGAAGCGC GCGAGCGCGC CGAAACGGTC GACGCCGCGG AAGCCCCGCG CGGCGAGCGC 
CGTGAACGCG GCGAGCGCCG TAAGCCGGCC CCGCATGTCG CGACGCTCGA AACGGTGAAT 
CGCGGCGAAA GCGCACATGC GGAAACCGCC GAAAAGCCGC TGTACGCGCT TGGCGCGGAA 
GCCGGCGTCG ACGCGGATTC GAACGCACGC GACGGCGAAG AACGCCGCCG CCGCCGCCGT 
GGCCGCCGTG GCGGCCGCCG CGAGCGTGAA GACGAAGTCG CGGGCGCCGT GCAGGCGGCG 
GAAGGCAGCG AAGGCGTGAC GGCCGAGGCC GAAGCGCTCG AGCACGCCGA GCACGCGCAA 
CAACGCGTCG CGCCGGTAGC GAACCAAGCG CCCGAGCATG CCGCGCAAGC GGGTGCGGGC 
GTCGCGGCGG CAGCCGCCGC GACCGTCGCA GCCGAGGCGA TTGCGCATGT CGAGAGCGGC 
GCGAAGGTCG AGCCGCAACC GGCGGCCGAG GCATCCGCCG GCGATACGGA ACAGGCCGAG 
GCGGTGCCCG CGCGGTCCAT CGAAGCACCG GCGCAAGCGG CTTCGACGGG TCAAGCGGAA 
GCCGTGCAAG CCGCACCGGC CGCACCGGCA CACGTGACGC CGGCCACGGC CGACGTCGCG 
CGCGAGCCGG CCGCGCCTGC CGAAACTGCG TCTGCCGAAA CGACGCCTGC TGAAATCCCG 
CCTGCCGAAG CCGCGCCCGC CGAAGCACCG GCCGCGGAAG CGTCCGAAGT GGCCGCGAGC 
GCGGTCGCTT CGGCCCCGGC CCCGGCCCCG GCCGCGGAGC CCGCGCCGGC CGCCGAGCCG 
CACCGGCCGG CGCCCGTCTC GGCCGCCCCC GCCTCGGCCG CGCCGGCCGA AGCGGACGCC 
GCGCGCGAGC CGGCCGCCGT CGCCGAGCCG CACGTGCCGG CGGCCGCCGC GACCCCTACC 
CCGGCTTCGG TGGCGACCAC GCCGGGCGTG AGCCTCGATA CGGCGCTCGC GGCCGCCGGC 
CTTGTCTGGG TCAATACCGA CACGGACAAG CTGCGCGCCG CACAGGCCGC CGCCGCGCAA 
ATCGTGCAGC CCGTGCGCGT GCCGCGCGAA CGCAAGCCGC TGCCGCCCGT CGACGCGACG 
CCGATGCAGC AGGTCGAGAC GACGCACCGC TGA 

 

Protein sequence

MKRMLFNATQ QEELRVAIVD GQKLIDIDIE TAGREQRKGN IYKGVVTRIE PSLEACFVNY 
GEDRHGFLPF KEVARQYFKE GVDMRSARIQ DALREGQELI VQVEKEERGN KGAALTTFIS 
LAGRYLVLMP NNPRGGGVSR RIEGDERQEL RETMAQLQIP DGMSMIARTA GIGRSAEELQ 
WDLNYLLQLW RAIEAASQSG HPGQPMLIYL ESSLVIRAIR DYFQPDIGEI LIDTTEIHDQ 
ARAFMDIVMP DNVGKVKRYH DDVPLFSRFQ IEHQIETAYS RTVPLPSGGA IVIDHTEALV 
AIDVNSARAT KGADIEETAT RTNLEAADEV ARQLRLRDLG GLIVIDFIDM ESAKSQREVE 
QRLKDALKHD RARVQMGKIS RFGLMELSRQ RLRPALSEGS HVTCPRCNGT GHIRDTESSA 
LQVLRIIQEE AMKENTAAIH CQVPVEVTAF LLNEKRQEIN KIESRFKVGV VLIPNKHLDT 
PHYKLERLRH DDARLDDPRA SWKMAEEAAR ELEAETGYSK RAEETKPRQE AAVKGITPER 
PAPSPAPQRQ SAPEAAAPVA AAPASGGGFM KWLKGLFGAQ PAAVPAPAPA AQETAARPAR 
ERAERGERGE KAERGERGGD RNRNRRGGAA QQGGGRDQAA AGGGRAQAPR AEREGKETRE 
PREGREARGG RDNREGREAR ETREAREPRE QREPREAREQ REARERAETV DAAEAPRGER 
RERGERRKPA PHVATLETVN RGESAHAETA EKPLYALGAE AGVDADSNAR DGEERRRRRR 
GRRGGRRERE DEVAGAVQAA EGSEGVTAEA EALEHAEHAQ QRVAPVANQA PEHAAQAGAG 
VAAAAAATVA AEAIAHVESG AKVEPQPAAE ASAGDTEQAE AVPARSIEAP AQAASTGQAE 
AVQAAPAAPA HVTPATADVA REPAAPAETA SAETTPAEIP PAEAAPAEAP AAEASEVAAS 
AVASAPAPAP AAEPAPAAEP HRPAPVSAAP ASAAPAEADA AREPAAVAEP HVPAAAATPT 
PASVATTPGV SLDTALAAAG LVWVNTDTDK LRAAQAAAAQ IVQPVRVPRE RKPLPPVDAT 
PMQQVETTHR