Gene BMA0520 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBMA0520 
Symbolrne 
ID3090951 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia mallei ATCC 23344 
KingdomBacteria 
Replicon accessionNC_006348 
Strand
Start bp545945 
End bp549217 
Gene Length3273 bp 
Protein Length1090 aa 
Translation table11 
GC content72% 
IMG OID637561353 
Productribonuclease E 
Protein accessionYP_102317 
Protein GI53725727 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1530] Ribonucleases G and E 
TIGRFAM ID[TIGR00757] ribonuclease, Rne/Rng family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000787566 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACGCA TGCTGTTCAA TGCGACGCAG CAGGAAGAAC TGCGCGTCGC CATCGTCGAT 
GGGCAGAAGC TCATCGATAT CGATATCGAA ACCGCCGGCC GCGAACAGCG CAAAGGCAAC
ATCTACAAGG GCGTCGTCAC CCGCATCGAA CCGTCGCTCG AAGCCTGCTT CGTCAATTAC
GGCGAAGACC GCCACGGCTT CCTGCCGTTC AAGGAAGTCG CCCGCCAGTA CTTCAAGGAA
GGCGTCGACA TGCGCTCCGC GCGCATCCAG GACGCGCTGC GCGAGGGCCA GGAGCTGATC
GTCCAGGTCG AGAAGGAAGA GCGCGGCAAC AAGGGCGCGG CGCTTACCAC CTTCATCTCG
CTCGCCGGCC GCTACCTCGT GCTGATGCCG AACAACCCGC GCGGCGGCGG CGTGTCGCGC
CGCATCGAGG GCGACGAGCG CCAGGAACTG CGCGAGACGA TGGCGCAACT GCAGATCCCC
GACGGCATGA GCATGATCGC CCGCACCGCG GGCATCGGCC GCAGCGCCGA GGAACTGCAG
TGGGACCTGA ACTACCTGCT GCAGCTCTGG CGCGCGATCG AGGCGGCGTC GCAAAGCGGC
CACCCCGGCC AGCCGATGCT GATCTACCTC GAATCGAGCC TCGTGATCCG AGCGATCCGG
GACTATTTCC AGCCGGACAT CGGCGAAATC CTGATCGACA CGACCGAGAT CCACGATCAG
GCGCGCGCGT TCATGGACAT CGTGATGCCC GACAACGTCG GCAAGGTGAA GCGCTATCAC
GACGACGTGC CCCTCTTCTC GCGCTTCCAG ATCGAGCACC AGATCGAAAC CGCGTACTCG
CGCACGGTGC CGCTGCCGTC GGGCGGCGCG ATCGTGATCG ACCACACCGA GGCGCTCGTC
GCGATCGACG TGAACTCGGC GCGCGCGACC AAGGGCGCGG ACATCGAGGA AACGGCGACC
CGCACGAACC TCGAGGCGGC CGACGAAGTC GCCCGCCAGT TACGTCTGCG CGACCTGGGC
GGCCTGATCG TGATCGACTT CATCGACATG GAATCGGCCA AGAGCCAGCG CGAAGTCGAG
CAGCGCCTGA AGGACGCGCT CAAGCACGAC CGCGCGCGCG TGCAGATGGG CAAGATCTCG
CGCTTCGGCC TGATGGAGCT GTCGCGCCAG CGCCTGCGCC CAGCCCTGTC CGAAGGCAGC
CACGTCACCT GCCCGCGCTG CAACGGCACG GGCCACATCC GCGACACCGA ATCGTCCGCG
CTGCAAGTGC TGCGGATCAT TCAGGAAGAA GCGATGAAGG AGAACACCGC GGCGATCCAC
TGTCAGGTGC CCGTCGAGGT GACGGCCTTC CTGCTCAACG AGAAGCGCCA GGAAATCAAC
AAGATCGAAT CGCGCTTCAA GGTCGGCGTC GTGCTGATTC CGAACAAGCA CCTCGATACG
CCGCACTACA AGCTCGAGCG CCTGCGTCAC GACGATGCGC GCCTCGACGA TCCGCGCGCA
TCGTGGAAGA TGGCCGAGGA AGCCGCCCGC GAGCTCGAGG CGGAAACCGG CTACAGCAAG
CGCGCCGAGG AAACGAAGCC GCGCCAGGAA GCGGCCGTCA AGGGCATCAC GCCCGAGCGG
CCGGCGCCGA GCCCCGCGCC GCAGCGCCAG AGCGCGCCGG AAGCGGCGGC GCCCGTGGCC
GCCGCGCCCG CGAGCGGCGG CGGTTTCATG AAATGGCTGA AGGGCCTGTT CGGCGCGCAG
CCGGCTGCGG TGCCCGCACC GGCGCCCGCC GCGCAGGAAA CGGCTGCGCG TCCGGCGCGC
GAGCGCGCGG AGCGTGGTGA GCGCGGCGAG AAGGCCGAGC GCGGCGAACG CGGCGGCGAT
CGCAACCGCA ACCGCCGCGG CGGCGCCGCG CAGCAGGGGG GTGGACGCGA CCAGGCGGCG
GCAGGCGGCG GCCGCGCTCA GGCGCCGCGC GCCGAGCGCG AAGGCAAGGA AACCCGCGAG
CCGCGCGAAG GCCGCGAAGC ACGCGGCGGC CGGGACAACC GGGAAGGCCG CGAGGCGCGC
GAAACCCGCG AGGCGCGCGA GCCCCGTGAA CAACGCGAGC CGCGCGAGGC ACGCGAGCAG
CGCGAAGCGC GCGAGCGCGC CGAAACGGTC GACGCCGCGG AAGCCCCGCG CGGCGAGCGC
CGTGAACGCG GCGAGCGCCG TAAGCCGGCC CCGCATGTCG CGACGCTCGA AACGGTGAAT
CGCGGCGAAA GCGCACATGC GGAAACCGCC GAAAAGCCGC TGTACGCGCT TGGCGCGGAA
GCCGGCGTCG ACGCGGATTC GAACGCACGC GACGGCGAAG AACGCCGCCG CCGCCGCCGT
GGCCGCCGTG GCGGCCGCCG CGAGCGTGAA GACGAAGTCG CGGGCGCCGT GCAGGCGGCG
GAAGGCAGCG AAGGCGTGAC GGCCGAGGCC GAAGCGCTCG AGCACGCCGA GCACGCGCAA
CAACGCGTCG CGCCGGTAGC GAACCAAGCG CCCGAGCATG CCGCGCAAGC GGGTGCGGGC
GTCGCGGCGG CAGCCGCCGC GACCGTCGCA GCCGAGGCGA TTGCGCATGT CGAGAGCGGC
GCGAAGGTCG AGCCGCAACC GGCGGCCGAG GCATCCGCCG GCGATACGGA ACAGGCCGAG
GCGGTGCCCG CGCGGTCCAT CGAAGCACCG GCGCAAGCGG CTTCGACGGG TCAAGCGGAA
GCCGTGCAAG CCGCACCGGC CGCACCGGCA CACGTGACGC CGGCCACGGC CGACGTCGCG
CGCGAGCCGG CCGCGCCTGC CGAAACTGCG TCTGCCGAAA CGACGCCTGC TGAAATCCCG
CCTGCCGAAG CCGCGCCCGC CGAAGCACCG GCCGCGGAAG CGTCCGAAGT GGCCGCGAGC
GCGGTCGCTT CGGCCCCGGC CCCGGCCCCG GCCGCGGAGC CCGCGCCGGC CGCCGAGCCG
CACCGGCCGG CGCCCGTCTC GGCCGCCCCC GCCTCGGCCG CGCCGGCCGA AGCGGACGCC
GCGCGCGAGC CGGCCGCCGT CGCCGAGCCG CACGTGCCGG CGGCCGCCGC GACCCCTACC
CCGGCTTCGG TGGCGACCAC GCCGGGCGTG AGCCTCGATA CGGCGCTCGC GGCCGCCGGC
CTTGTCTGGG TCAATACCGA CACGGACAAG CTGCGCGCCG CACAGGCCGC CGCCGCGCAA
ATCGTGCAGC CCGTGCGCGT GCCGCGCGAA CGCAAGCCGC TGCCGCCCGT CGACGCGACG
CCGATGCAGC AGGTCGAGAC GACGCACCGC TGA
 
Protein sequence
MKRMLFNATQ QEELRVAIVD GQKLIDIDIE TAGREQRKGN IYKGVVTRIE PSLEACFVNY 
GEDRHGFLPF KEVARQYFKE GVDMRSARIQ DALREGQELI VQVEKEERGN KGAALTTFIS
LAGRYLVLMP NNPRGGGVSR RIEGDERQEL RETMAQLQIP DGMSMIARTA GIGRSAEELQ
WDLNYLLQLW RAIEAASQSG HPGQPMLIYL ESSLVIRAIR DYFQPDIGEI LIDTTEIHDQ
ARAFMDIVMP DNVGKVKRYH DDVPLFSRFQ IEHQIETAYS RTVPLPSGGA IVIDHTEALV
AIDVNSARAT KGADIEETAT RTNLEAADEV ARQLRLRDLG GLIVIDFIDM ESAKSQREVE
QRLKDALKHD RARVQMGKIS RFGLMELSRQ RLRPALSEGS HVTCPRCNGT GHIRDTESSA
LQVLRIIQEE AMKENTAAIH CQVPVEVTAF LLNEKRQEIN KIESRFKVGV VLIPNKHLDT
PHYKLERLRH DDARLDDPRA SWKMAEEAAR ELEAETGYSK RAEETKPRQE AAVKGITPER
PAPSPAPQRQ SAPEAAAPVA AAPASGGGFM KWLKGLFGAQ PAAVPAPAPA AQETAARPAR
ERAERGERGE KAERGERGGD RNRNRRGGAA QQGGGRDQAA AGGGRAQAPR AEREGKETRE
PREGREARGG RDNREGREAR ETREAREPRE QREPREAREQ REARERAETV DAAEAPRGER
RERGERRKPA PHVATLETVN RGESAHAETA EKPLYALGAE AGVDADSNAR DGEERRRRRR
GRRGGRRERE DEVAGAVQAA EGSEGVTAEA EALEHAEHAQ QRVAPVANQA PEHAAQAGAG
VAAAAAATVA AEAIAHVESG AKVEPQPAAE ASAGDTEQAE AVPARSIEAP AQAASTGQAE
AVQAAPAAPA HVTPATADVA REPAAPAETA SAETTPAEIP PAEAAPAEAP AAEASEVAAS
AVASAPAPAP AAEPAPAAEP HRPAPVSAAP ASAAPAEADA AREPAAVAEP HVPAAAATPT
PASVATTPGV SLDTALAAAG LVWVNTDTDK LRAAQAAAAQ IVQPVRVPRE RKPLPPVDAT
PMQQVETTHR