| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BT9727_4808 |
|---|
| Symbol | vacB |
|---|
| ID | 2857472 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bacillus thuringiensis serovar konkukian str. 97-27 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_005957 |
|---|
| Strand | - |
|---|
| Start bp | 4857959 |
|---|
| End bp | 4860373 |
|---|
| Gene Length | 2415 bp |
|---|
| Protein Length | 804 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637516242 |
|---|
| Product | ribonuclease R (RNase R) |
|---|
| Protein accession | YP_039117 |
|---|
| Protein GI | 49481126 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00000493308 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGAAGAAA TCATACAAGA ACATATTGAT AAGTTGTTAT TATTTATGAG AGAAGAAGCG
TATAAACCGC TAACGATACA AGAGTTAGAA GAGGCATTTG GGATTGAAGG TTCTGAGGGC
TTCAAAGATT TCGTAAAGGC ACTTGTAACG ATGGAAGAAA AGGGACTTGT TATTCGTACT
CGTAGCAACC GTTACGGTCT TCCTGAAAAG ATGAATTTAA TACGTGGTAA GTTAATTGGA
CATGCACGTG GTTTTGCATT TGTTGTACCA GACGAGAAGA AAACGGGAGA CGATGATCTT
TTCATCCCGC CTACAGAATT AAACGGTGCG CTTCATGGTG ATACAGTATT AGCACGCCTT
AGTTCCCAAT CGAGTGGTTC GCGTCAAGAA GGTTCTATTG TACGCATTTT AGAACGTGGC
ACGAAAGAAT TAGTTGGTAC ATATACAGAA TCGAAAAACT TTGGATTTGT TATACCTGAC
AATAAACGTT GGACAAGTGA CATTTTCGTA TTGAAAAGCG CATCAATGGG CGCTGTAGAA
GGTCATAAAG TAGTTGTGAA AATTACGAGC TATCCAGAGA ATCGTTTAAG TGCAGAAGGT
GAAGTTATTC AAATTCTAGG TCATAAAAAT GATCCAGGAG TAGATATTTT ATCTGTCATT
CATAAACATC ACTTGCCTTT AGCGTTCCCT GAAGAAGTGA TGGAACATGC AAACAGTGTA
CCAGAAACGA TTTCAGAAGA AGATTTAAAA GATCGCCGTG ACCTGCGTGA CCAAATGATC
GTAACAATTG ACGGTGCAGA CGCAAAAGAT TTAGATGACG CTGTTACAGT AACGAAGCTC
GAGAACGGTA ACTATAAACT TGGCGTTCAC ATTGCGGATG TAAGTCATTA CGTTCAAGAA
GGTTCTCCAA TTGATGTAGA AGCAGCGGAA AGAGCGACGA GTGTGTATCT TGTTGACCGT
GTAATTCCGA TGATTCCACA TCGTCTATCT AACGGTATTT GTTCATTAAA TCCGAAAGTA
GACCGTCTGA CGTTATCTTG TGAAATGGAA ATCAACAACT TAGGTGACGT TGTCAAACAC
GAGATTTTCC AAAGTGTAAT TAAAACGACA GAGCGTATGA CGTATGCTGA CGTAAGAAGC
ATTTTAGAAG ATGAGGACGA AGAGCTAATT AAGCGTTATG AACCGTTAGT GCCGATGTTT
AAAGAGATGG GGCAATTAGC ACAAATTTTA CGTGAAAAAC GTATGCGCCG CGGTGCAATC
GACTTTGACT TTAAAGAAGC GAAAGTATTA GTGGATGAAG AAGGAAAACC GACAGATGTT
GTCATGCGTG ATCGTTCTGT ATCAGAGAAG TTAATTGAAG AATTTATGCT TGTTGCGAAC
GAAACAGTAG CAGAGCACTT CCACTGGATG AACGTACCAT TCATGTATCG TGTCCATGAA
GATCCGAAAG AAGATAAGTT AGAGCGTTTC TTCGAGTTTG TAACGAACTT CGGATATGCG
GTAAAAGGAC GTGCGAATGA AGTGCATCCT CGTGCGCTGC AACAAATTCT TGAAATGGTT
CAAGGACAGC CTGAAGAAGT AGTCATTTCA ACAGTTATGC TTCGTTCTAT GAAGCAAGCA
CGTTACGATG CAGATAGCTT AGGACACTTT GGTTTATCAA CTGAATTCTA CACACATTTC
ACATCGCCAA TTCGTCGTTA CCCAGATACG ATTGTTCATA GATTAATTCG TGAATACATC
ATTAACGGTA AAGTCGACAA TGAAACACAA GCAAAGTGGC GTGAAAAATT ACCTGAGATT
GCAGAACACT CTTCTAATAT GGAGCGTCGT GCTGTTGAAG CAGAACGTGA AACAGATGAG
CTGAAAAAAG CAGAATACAT GCTTGATAAG ATTGGGGAAG AGTATGACGG TATGATTAGC
TCTGTAACAA ACTTCGGTTT ATTCGTAGAG CTTCCAAATA CAATTGAAGG TCTTGTACAC
GTTAGCTACT TAACGGATGA TTACTACCGT TACGATGAGC AGCATTTCGC AATGATCGGA
GAACGTACAG GTAACGTATT CCGCATCGGT GACGAAATTA CAATTCGTGT TATTAATGTA
AACAAAGACG AGCGTGCAAT CGACTTTGAA ATCGTTGGCA TGAAAGGTAC ACCTCGTCGT
AAGTTCAAAG ACCGCCCAGT CGTTATTGAA CAGCCAAGAA CAGGCAGAAA GAAACGCGGG
GGACGCAGTG AGCGCAGTAA TGAGCGTGGC GGAGAACGTG GCACAGGTAG AAAATTTGAC
CGTGGTGGCA AAGGGAAAGG AAGAGGATCC GCATCCGCTA GCCAGCCAGG GAAAAAAGAT
GGTAACGGTA AGAAGAAAAA AGCATTCTTC GAAAACGTAC CAGGATTCAA GAAGAAAAAG
AAAAAGCGTA AGTAA
|
|---|
| Protein sequence | MEEIIQEHID KLLLFMREEA YKPLTIQELE EAFGIEGSEG FKDFVKALVT MEEKGLVIRT
RSNRYGLPEK MNLIRGKLIG HARGFAFVVP DEKKTGDDDL FIPPTELNGA LHGDTVLARL
SSQSSGSRQE GSIVRILERG TKELVGTYTE SKNFGFVIPD NKRWTSDIFV LKSASMGAVE
GHKVVVKITS YPENRLSAEG EVIQILGHKN DPGVDILSVI HKHHLPLAFP EEVMEHANSV
PETISEEDLK DRRDLRDQMI VTIDGADAKD LDDAVTVTKL ENGNYKLGVH IADVSHYVQE
GSPIDVEAAE RATSVYLVDR VIPMIPHRLS NGICSLNPKV DRLTLSCEME INNLGDVVKH
EIFQSVIKTT ERMTYADVRS ILEDEDEELI KRYEPLVPMF KEMGQLAQIL REKRMRRGAI
DFDFKEAKVL VDEEGKPTDV VMRDRSVSEK LIEEFMLVAN ETVAEHFHWM NVPFMYRVHE
DPKEDKLERF FEFVTNFGYA VKGRANEVHP RALQQILEMV QGQPEEVVIS TVMLRSMKQA
RYDADSLGHF GLSTEFYTHF TSPIRRYPDT IVHRLIREYI INGKVDNETQ AKWREKLPEI
AEHSSNMERR AVEAERETDE LKKAEYMLDK IGEEYDGMIS SVTNFGLFVE LPNTIEGLVH
VSYLTDDYYR YDEQHFAMIG ERTGNVFRIG DEITIRVINV NKDERAIDFE IVGMKGTPRR
KFKDRPVVIE QPRTGRKKRG GRSERSNERG GERGTGRKFD RGGKGKGRGS ASASQPGKKD
GNGKKKKAFF ENVPGFKKKK KKRK
|
|---|
| |