| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BT9727_3742 |
|---|
| Symbol | |
|---|
| ID | 2858742 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bacillus thuringiensis serovar konkukian str. 97-27 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_005957 |
|---|
| Strand | + |
|---|
| Start bp | 3836244 |
|---|
| End bp | 3837785 |
|---|
| Gene Length | 1542 bp |
|---|
| Protein Length | 513 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637515159 |
|---|
| Product | multidrug-efflux transporter |
|---|
| Protein accession | YP_038061 |
|---|
| Protein GI | 49480608 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily
[TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00000000000625397 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGAATCTC AATTATTAAA AAAAGACTCC AACAAGACAA AATTTGTTGT TGCTGGTTTA
CTACTTGGTA TTTTAATGGC GGCAATGGAT AATACAATTG TTGCAACAGC AATGGCAACA
ATCGTTGGAG ATCTAGGAGG ATTTGACAAG TTCGTTTGGG TCACGTCTGC ATATATGGTA
GCAACAATGG CAGGGATGCC TATCTTCGGA AAACTTTCTG ATATGTATGG ACGGAAACGC
TTTTATATTG GTGGCCTTAT TCTTTTCTTG TTCGGCTCTG CACTTTGCGG AACAGCATCT
AGTATTGAGC AACTAAGTAT TTATAGAGCA ATTCAAGGAA TTGGTGGCGG TGCTCTTATG
CCTATCGCCT TCACAATTAT GTACGATATA TTCCCACCAG AAAAGCGTGG AAAAATGACA
GGGCTATTCG GTGCTGTTTT CGGGACATCT AGTGTATTCG GTCCTTTATT AGGTGCGTAT
ATTACAGACT ATATAAGTTG GCACTGGGTC TTCTATATTA ATATCCCATT AGGACTTATC
TCCTTCTTCT TCATTACGAA ATACTACAGT GAATCTCTAG AATTTAGAAA ACAAAAAATT
GATTGGGCTG GCGCTATTAC ACTTGTTATT AGTATCGTTT GCTTAATGTT CGCCTTAGAA
CTTGGTGGTA AAGAATACGC ATGGAATTCC ACTGTAATTA TCGGCTTATT TACAACCGTT
GTTATTATGC TTATTATTTT CTTCTTCGTA GAACGAAAAG CAACCGAGCC TATCATTTCT
TTCCATCTAT TTAAAAAACC TTTATTCGCA GCTAGCCAAG GTGTTGCCTT TTTCTATGGT
GCCGCTTTTA TCATCTGTAC AGTTTATATC CCAATCTTCG TTCAAGGTGT TCTCGGTGGT
TCAGCCTCAA ATGCTGGATT GATATTAACA CCTATGATGG TTGGCTCTGT AATTGGAAGT
CAAACAGGTG GACAGTTAGC TTCTCGAACA AGTTATCGTA ACATTATGAT GGTATCTGGA
GTTTTCTTCG TTCTTGGTAT TTATTTACTA AGCACTTTAA CAATGGACAC ACCTCGCCTA
CTCGTAACAC TATTTATGGT TCTCGCTGGG CTTGGAGTTG GCTTCTCATT CTCAGTTTTA
AGTATGTCTT CTATCCACAA ATTAGAAATG AGAGACCGTG GTTCTGCTAC ATCAACAAAT
TCATTCTTCC GTTCACTCGG TATGACTCTT GGTGTAACGA TTTTTGGTAC AATTCAAAAT
CATATTTTTA CAGATAAACT AAATACTTTG TTCCCTCCTG AACTAGCTAA ATTAGCTCCA
AAGGGCGGAG ACACAAGTTT CTTATTATCA CCAGGTGCTA CCGATAAAAT ACCAGCTGAA
ATATTAACTG GTATTAAAGA AGCTCTCGCT ACATCTATTG CCAGTACATT CTTCTGGGCA
CTTATCCCGG CTGTACTAAG CATTATTTGC ATTTTACTTA TGGGAAATGA GCGTCTTTTT
ACAGGACCAA AAACGAAACA AAAACAGAAG AAGGTAAGTT AA
|
|---|
| Protein sequence | MESQLLKKDS NKTKFVVAGL LLGILMAAMD NTIVATAMAT IVGDLGGFDK FVWVTSAYMV
ATMAGMPIFG KLSDMYGRKR FYIGGLILFL FGSALCGTAS SIEQLSIYRA IQGIGGGALM
PIAFTIMYDI FPPEKRGKMT GLFGAVFGTS SVFGPLLGAY ITDYISWHWV FYINIPLGLI
SFFFITKYYS ESLEFRKQKI DWAGAITLVI SIVCLMFALE LGGKEYAWNS TVIIGLFTTV
VIMLIIFFFV ERKATEPIIS FHLFKKPLFA ASQGVAFFYG AAFIICTVYI PIFVQGVLGG
SASNAGLILT PMMVGSVIGS QTGGQLASRT SYRNIMMVSG VFFVLGIYLL STLTMDTPRL
LVTLFMVLAG LGVGFSFSVL SMSSIHKLEM RDRGSATSTN SFFRSLGMTL GVTIFGTIQN
HIFTDKLNTL FPPELAKLAP KGGDTSFLLS PGATDKIPAE ILTGIKEALA TSIASTFFWA
LIPAVLSIIC ILLMGNERLF TGPKTKQKQK KVS
|
|---|
| |