Gene BT9727_3315 details

Gene Information

• Locus tag: BT9727_3315
• Symbol: sqhC
• ID: 2855061
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Bacillus thuringiensis serovar konkukian str. 97-27
• Kingdom: Bacteria
• Replicon accession: NC_005957
• Strand: -
• Start bp: 3389373
• End bp: 3391226
• Gene Length: 1854 bp
• Protein Length: 617 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 637514735
• Product: squalene-hopene cyclase
• Protein accession: YP_037637
• Protein GI: 49478274
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG1657] Squalene cyclase
• TIGRFAM ID: [TIGR01507] squalene-hopene cyclase; [TIGR01787] squalene/oxidosqualene cyclases

Plasmid Coverage information

• Num covering plasmid clones: 52
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGTTATTAT ACGAAAAAGC GCATGAAGAA ATAGTGAGAA GAGCAACAGC ACTTCAAACA 
ATGCAATGGC AAGATGGTAC GTGGCGATTT TGTTTTGAAG GAGCTCCATT AACAGATTGC 
CATATGATTT TTTTATTAAA ATTATTAGGT AGAGATAAAG AGATAGAACC GTTCGTAGAA 
AGAGTAGCAT CACTCCAAAC AAATGAAGGA ACATGGAAAT TGTATGAAGA TGAAGTAGGA 
GGTAATTTAT CAGCTACAAT TCAATCTTAT GCCGCCTTAC TTGCATCGAA AAAATATACA 
AAAGAAGATG CGAATATGAA ACGAGCGGAA AATTTTATTC AGGAACGCGG TGGCGTGGCG 
CGTGCTCATT TTATGACGAA GTTTTTATTA GCAATTCATG GAGAATATGA ATATCCTTCA 
CTCTTTCATT TACCAACACC AATCATGTTT CTACAGAATG ATTCCCCCTT TAGTATATTT 
GAATTAAGTA GCTCAGCACG TATTCATTTA ATTCCGATGA TGCTATGTTT AAATAAAAGA 
TTTCGAGTAG GGAAAAAGTT ATTACCAAAT TTAAATCACA TTGCGGGCGG AGGCGGAGAA 
TGGTTTCGGG AGGATCGGTC TCCAGTTTTT CAAACGTTAT TAAGTGATGT AAAACAAATT 
ATATCGTATC CACTTTCGTT ACATCATAAA GGATATGAGG AAATAGAACG TTTTATGAAA 
GAGCGTATTG ATGAAAATGG AACGTTATAT AGTTACGCAA CTGCCTCGTT TTATATGATT 
TATGCTTTAC TTGCGTTAGG GCATTCTCTT CAATCATCAA TGATTCAAAA GGCTATAGCT 
GGGATAACAT CTTATATATG GAAGATGGAA AGAGGGAATC ATTTGCAAAA CTCTCCTTCA 
ACCGTGTGGG ATACAGCTTT ATTAAGCTAT GCGTTACAAG AGGCTCAAGT TTCAAAGGAT 
AATAAGATGA TTCAAAATGC AACAGCGTAT TTATTAAAAA AACAGCATAC AAAAAAAGCT 
GATTGGAGCG TACATGCTCC GGCGCTTACT CCTGGCGGTT GGGGTTTTTC GGATGTGAAT 
ACGACAATTC CAGATATAGA TGATACAACA GCTGTGCTAA GGGCATTGGC ACGAAGTAGA 
GGAAACAAAA ATATAGATAA TGCTTGGAAG AAAGGGGGCA ATTGGATTAA AGGATTACAA 
AACAATGATG GTGGCTGGGG AGCATTTGAA AAAGGTGTGA CGAGCAAATT ATTAGCAAAA 
TTACCAATCG AAAACGCAAG TGATATGATT ACAGATCCTT CTACGCCAGA TATTACGGGG 
AGAGTGTTAG AGTTTTTCGG GACATATGCA CAAAACGAAT TGCCTGAGAA ACAGATACAA 
AGGGCAATAA ATTGGTTAAT GAATGTACAA GAGGAAAATG GATCATGGTA TGGGAAATGG 
GGGATTTGTT ATATATATGG TACGTGGGCT GTTATGACTG GTTTACGGTC ACTCGGAATT 
CCGTCTAGCA ATCCTTCATT GAAACGAGCA GCTTCATGGC TTGAACATAT ACAGCATGAA 
GATGGTGGTT GGGGAGAATC ATGCCACAGT AGTGTGGAGA AAAGGTTCGT TACTTTACCA 
TTTAGTACAC CATCCCAAAC TGCATGGGCG TTAGATGCTC TCATTTCTTA CTATGATACA 
GAAACGCCAG CTATTCGAAA AGGTGTTTCA TATTTGCTTT CGAATCCTTA TGTGAATGAA 
AGATATCCTA CTGGAACAGG TTTACCAGGT GCGTTTTATA TTAGGTATCA TAGCTATGCC 
CATATATATC CACTACTTAC TTTAGCACAT TATTTAAAAA AATATAGAAA ATAA 

 

Protein sequence

MLLYEKAHEE IVRRATALQT MQWQDGTWRF CFEGAPLTDC HMIFLLKLLG RDKEIEPFVE 
RVASLQTNEG TWKLYEDEVG GNLSATIQSY AALLASKKYT KEDANMKRAE NFIQERGGVA 
RAHFMTKFLL AIHGEYEYPS LFHLPTPIMF LQNDSPFSIF ELSSSARIHL IPMMLCLNKR 
FRVGKKLLPN LNHIAGGGGE WFREDRSPVF QTLLSDVKQI ISYPLSLHHK GYEEIERFMK 
ERIDENGTLY SYATASFYMI YALLALGHSL QSSMIQKAIA GITSYIWKME RGNHLQNSPS 
TVWDTALLSY ALQEAQVSKD NKMIQNATAY LLKKQHTKKA DWSVHAPALT PGGWGFSDVN 
TTIPDIDDTT AVLRALARSR GNKNIDNAWK KGGNWIKGLQ NNDGGWGAFE KGVTSKLLAK 
LPIENASDMI TDPSTPDITG RVLEFFGTYA QNELPEKQIQ RAINWLMNVQ EENGSWYGKW 
GICYIYGTWA VMTGLRSLGI PSSNPSLKRA ASWLEHIQHE DGGWGESCHS SVEKRFVTLP 
FSTPSQTAWA LDALISYYDT ETPAIRKGVS YLLSNPYVNE RYPTGTGLPG AFYIRYHSYA 
HIYPLLTLAH YLKKYRK