Gene BT9727_0276 details

Gene Information

• Locus tag: BT9727_0276
• Symbol: ligA
• ID: 2858052
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Bacillus thuringiensis serovar konkukian str. 97-27
• Kingdom: Bacteria
• Replicon accession: NC_005957
• Strand: +
• Start bp: 327647
• End bp: 329656
• Gene Length: 2010 bp
• Protein Length: 669 aa
• Translation table: 11
• GC content: 38%
• IMG OID: 637511680
• Product: NAD-dependent DNA ligase LigA
• Protein accession: YP_034626
• Protein GI: 49479078
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 67
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCAAAAG AGATAGCAAA AAAACGTATA GAAGAACTAC GTGATTTGTT AAATACATTT 
AACTATCAAT ATCACGTATT AGACAATCCT TCTGTTTCTG ATGCGGAGTA CGACCGTAAT 
ATGCAGGAGC TTATAAAATT AGAAGCAGAG AATCCAGAGT TTATGAGTGA AGATTCTCCC 
TCCGTTCGCG TTGGGGGGAC GGTTCTTGAT ATATTTGAAA AAGTAACACA TAAGTCACCG 
ATGTTAAGTT TAGGAAATGC ATTTAACGAA GGGGATTTAC GTGATTTTGA CCGACGAGTA 
CGTCAAGGAA TTGATGATGC GAATGTAAGA TATATATGCG AATTAAAAAT TGACGGACTT 
GCTGTTTCAC TTCATTATGA AAAAGGACGC TTCATTCAAG GGGCAACACG TGGTGATGGT 
GTAACAGGTG AAGATATTAC CCAAAATTTA AAAACGATTA AAGCAATCCC GCTTCGTTTA 
AATGAAGAAG TAACGTTAGA AGCACGAGGC GAAGCTTATA TGCCGAAGCG TTCATTCGTT 
AAGTTAAATG AAGAAAAAGA GCAAAATGGT GAAGATGTAT TTGCGAATCC GCGTAATGCG 
GCAGCAGGTT CAATCCGCCA ACTTGATCCG AAAATTGCAG CGAAGCGTAA CTTATCTATG 
TTTGTATATG GTCTTGCGAA TGTAGAAGAA AAAACAATTC CATCACATAG TGAATCGCTT 
GATTTCTTAG GTGAACTTGG ATTCAAAACA AATCCAAATC GTCGTACATG TGAAACAATT 
GAAGAAGTTA TAGCTTATGT AGAAGAATGG CAAGAAAAAC GTCCACATCT TGATTATGAG 
ATTGATGGGA TCGTTATAAA AGTAGACGAT GTTGCTCTTC AAGAAAGTCT AGGAACTACA 
GCAAAGAGTC CAAGATGGGC GATTGCTTAT AAATTCCCAG CGGAAGAAGT TGTAACAAGA 
TTAACGGGCA TTGAATTAAG TGTTGGTCGT ACAGGGGTTG TAACACCGAC TGCAGAGCTA 
GAGCCAGTGC GAGTGGCTGG TACGATCGTT CGTCGTGCTT CTTTACATAA CGAAGATTTA 
ATTCGTGAAA AAGATATTCG AATTGGTGAC TACGTTGTTG TGAAGAAAGC TGGAGATATT 
ATTCCTGAAG TTGTAAATGT TATTTTTGAT AAGCGTACTG GTGAGGAAGA AGAATATCAT 
ATGCCAACGC ATTGCCCAGC ATGTGAGAGT GAACTAGTTC GTTTAGAAGA AGAGGTAGCA 
CTTCGTTGTA TAAATCCAAC TTGTCCTGCT CAAATTCGAG AAGGATTAAT CCATTTCGTT 
TCAAGAAATG CAATGAATAT TGATGGTCTT GGAGAACGTG TCATTACACA ACTCTTTGAT 
GCTGATTATA TTCGTACATT TGCGGATTTA TATTCGTTGA CGAAAGAGCA ATTATTACAG 
TTAGAACGAT TCGGAGAAAA ATCAGCAACG AATTTAGTAC AAGCAATTGA GAATTCTAAA 
GAAAACTCAT TAGAGCGATT ATTATTCGGT CTTGGTATTC GCCATGTCGG AGCGAAAGCA 
GCACGTACAT TTGCAGAGCA TTTCGAAACG ATGGATGCAC TTGTGAAAGC GACGGAAGAA 
GAATTAAAAG CAATTAACGA GATTGGTGAA AAAATGGCTC AATCCGTCGT GGCGTATTTT 
GATAATGAAG ACGTATTAGA GCTATTACAA CAATTTAAAG AGTATGGCGT GAATATGACA 
TACAAAGGTA TAAAAATTGC TGATTTACAA AATGTTGAGT CATACTTTGC AGGAAAAACT 
GTCGTTTTAA CTGGGAAATT AGAAGTTATG GGACGTAGTG AAGCGAAGAA GAAGATTGAG 
GCATTAGGTG GAAAAGTAAC AGGAAGTGTT AGTAAAAGTA CGGATTTAGT TGTCGCAGGT 
GAAGCGGCAG GTTCGAAATT AGCACAAGCG GAGAAACATA ATGTTGAGGT TTGGAATGAA 
GAGAGGTTCT TACAAGAGCT AAATAAGTAA 

 

Protein sequence

MSKEIAKKRI EELRDLLNTF NYQYHVLDNP SVSDAEYDRN MQELIKLEAE NPEFMSEDSP 
SVRVGGTVLD IFEKVTHKSP MLSLGNAFNE GDLRDFDRRV RQGIDDANVR YICELKIDGL 
AVSLHYEKGR FIQGATRGDG VTGEDITQNL KTIKAIPLRL NEEVTLEARG EAYMPKRSFV 
KLNEEKEQNG EDVFANPRNA AAGSIRQLDP KIAAKRNLSM FVYGLANVEE KTIPSHSESL 
DFLGELGFKT NPNRRTCETI EEVIAYVEEW QEKRPHLDYE IDGIVIKVDD VALQESLGTT 
AKSPRWAIAY KFPAEEVVTR LTGIELSVGR TGVVTPTAEL EPVRVAGTIV RRASLHNEDL 
IREKDIRIGD YVVVKKAGDI IPEVVNVIFD KRTGEEEEYH MPTHCPACES ELVRLEEEVA 
LRCINPTCPA QIREGLIHFV SRNAMNIDGL GERVITQLFD ADYIRTFADL YSLTKEQLLQ 
LERFGEKSAT NLVQAIENSK ENSLERLLFG LGIRHVGAKA ARTFAEHFET MDALVKATEE 
ELKAINEIGE KMAQSVVAYF DNEDVLELLQ QFKEYGVNMT YKGIKIADLQ NVESYFAGKT 
VVLTGKLEVM GRSEAKKKIE ALGGKVTGSV SKSTDLVVAG EAAGSKLAQA EKHNVEVWNE 
ERFLQELNK