Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BT9727_0099 |
Symbol | rpoC |
ID | 2853913 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bacillus thuringiensis serovar konkukian str. 97-27 |
Kingdom | Bacteria |
Replicon accession | NC_005957 |
Strand | + |
Start bp | 117694 |
End bp | 121305 |
Gene Length | 3612 bp |
Protein Length | 1203 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 637511469 |
Product | DNA-directed RNA polymerase subunit beta' |
Protein accession | YP_034455 |
Protein GI | 49479285 |
COG category | [K] Transcription |
COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0680742 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGATAGATG TAAATAACTT TGAATATATG AAGATTGGAC TTGCTTCACC TGACAAGATT CGTTCTTGGT CATACGGTGA AGTTAAGAAA CCAGAAACAA TTAACTATCG TACGTTAAAG CCTGAAAAAG ATGGCTTGTT CTGTGAGCGT ATTTTCGGAC CACAAAAGGA CTGGGAATGT CATTGCGGAA AATACAAACG TGTACGTTAT AAAGGTGTAG TTTGTGATCG ATGTGGCGTT GAAGTAACGC GTGCGAAAGT ACGTCGTGAA CGTATGGGTC ATATCGAATT AGCTGCTCCT GTATCTCATA TTTGGTATTT CAAAGGTATC CCGAGCCGCA TGGGACTTGT CTTAGACATG TCCCCTCGCG CGCTTGAAGA AGTAATTTAT TTCGCTTCTT ATGTTGTAAC AGAAAGTGGA GATACACCAC TTGATAAGAA GCAATTACTT TCTGAAAAAG AATACCGTGC ATATCGTGAT CGATATGGTA GCACATTCCA AGCTGCTATG GGTGCAGAAG CGATTAAAAA GCTATTACAA GACATCGATT TAGATAAAGA AGTAGACTTC TTAAAAGAAG AATTAAAAAC AGCACAAGGA CAACGCCGTA CTCGTGCTAT TAAACGTCTA GAAGTATTAG AAGCATTCCG TAACTCTGGA AATGAGCCAT CTTGGATGAT CTTAGATGTT CTACCAGTAA TCCCACCAGA ACTACGACCA ATGGTACAGT TAGATGGTGG ACGTTTTGCT ACTTCTGACT TAAACGACTT ATACCGTCGT GTAATTAACC GTAACAACCG TTTAAAACGT CTATTGGACT TAGGTGCACC AAGCATTATC GTTCAAAACG AAAAACGTAT GTTACAAGAA GCTGTAGACG CATTAATCGA TAATGGTCGT CGTGGCCGTC CAGTTACTGG ACCAGGTAAC CGTCCATTAA AATCTCTATC TCACATGCTT AAAGGTAAAC AAGGACGTTT CCGTCAAAAC TTATTAGGTA AGCGTGTTGA CTACTCTGGT CGTTCTGTAA TCGTTGTAGG ACCGAACTTA AAGATGTATC AATGTGGATT ACCGAAAGAG ATGGCGCTTG AACTGTTCAA ACCTTTCGTA ATGAAAGAGT TAGTTGAAAA AGGATTAGCA CACAACATTA AGAGTGCGAA ACGTAAAATC GAGCGTGTAC AACCTGAAGT TTGGGACGTT TTAGAATCTG TGATTAAAGA ACATCCAGTA CTTCTAAACC GCGCACCAAC ACTTCACCGT CTTGGTATTC AGGCGTTTGA ACCTACATTA GTAGAAGGTC GCGCAATCCG TCTTCACCCA CTTGTATGTA CTGCATACAA CGCGGACTTT GACGGTGACC AAATGGCCGT TCACGTACCT TTATCATCAG AAGCGCAAGC AGAAGCTCGT CTTCTTATGT TAGCGGCACA AAACATCTTG AACCCGAAAG ACGGTAAACC AGTTGTTACT CCATCTCAGG ATATGGTATT AGGTAACTAC TACTTAACAC TTGAGCGTGA AGGTGCAATC GGTGAAGGTA TGGTCTTCAA AGATGCGAAC GAAGCATTAC TTGCATATCA AAATGGATAT GTACATCTTC ATACGCGTGT TGCAGTAGCT GCAAGTGCAG TAAACAACGC AACATTTACT GAAGAGCAAA AGAATATGCT TCTATTAACA ACAGTTGGTA AATTAATATT TAACGAAATC TTACCAGAGT CGTTCCCTTA TATTAATGAA CCAACAAATT CAAACCTTGA AAAAGAAACA CCAGCGAAAT ATTTCGTTGA AAAAGGTGCG AACATTAAAG AGATTATTGC TAGTCGCGAA GAAGTGGCAC CATTCAGCAA GAAAATCCTT GGTAACATCA TTGCGGAAGT GTTTAAACGT TTCAAAATTA CAGAAACGTC TCGTATGCTT GACCGTATGA AAAACTTAGG ATTCAAGTAC TCTACAAAAG CTGGTATTAC AGTTGGGGTA TCTGACATTC TTGTATTAGG TGAAAAAGAT GAAATTCTCC ACGAAGCACA AGCAAAAGTA GATAATGTAA TTAAACAATT CCGTCGCGGT TTAATCACGG AAGAAGAACG TTACGATCGC GTTATCTCTA TTTGGAGTAA TGCAAAAGAT GTTATCCAAG GAAAACTGAT GAAGTCCTTG AATAAACGCA ACCCAATCTT CATGATGAGT GATTCCGGTG CCCGTGGTAA CGCATCGAAC TTTACTCAGC TTGCTGGTAT GCGTGGTCTG ATGGCCAATC CATCTGGTCG TATCATTGAA CTTCCAATCA AATCAAGTTT CCGTGAAGGT TTAACAGTAC TTGAGTACTT CATCTCTACG CATGGTGCGC GTAAAGGTCT TGCCGATACA GCACTGAAAA CTGCCGATTC TGGTTACTTA ACACGTCGTC TTGTTGACGT TGCACAAGAT GTAATCGTTC GTGAAGATGA TTGTGGAACA GATCGCGGTT TATTAATTGG TGCGATTAAA GAGGGTAATG AAGTTATTGA GTCATTATAT GATCGTCTTG TTGGACGTTT TGCAAGAAAA ACTGTAAAAC ATCCTGAAAC AGGTGAAGTA TTAGTTGCTG AAAATCAATT AATTACTGAA GATATCGCTC ATATTGTTGA AAACTCGGGT GTTGAAACTG TAAACATTCG TTCAGCGTTT ACGTGTAACA CTCGCCATGG TGTATGTAAG AAGTGTTACG GTCGTAACTT AGCAACTGGA ACAGACGTAG AAGTAGGGGA AGCGGTAGGT ATTATCGCAG CTCAATCTAT CGGTGAGCCA GGTACACAGT TAACGATGCG TACGTTCCAT ACAGGTGGGG TTGCCGGAGA TGATATCACT CAAGGTTTAC CTCGTATCCA AGAGATCTTC GAAGCTCGTA ATCCGAAAGG TCAGGCTGTT ATCAGTGAAA TCGACGGTGT TATCGCAGCG ATCAACGATG TTAAAGATCG CCAAGAAGTA GTTGTACAGG GTGAAGTTGA AGCTCGTACG TATGCTATTC CTTATGGTGC TCGTCTGAAA GTAATTCCAG GACAGAAAAT TAGCCACGGT AAAGAGTTAA CAGAAGGTTC TATTGATCCG AAAGAATTAC TAAAAGTAAC AGACATTACG GCAGTTCAAG AATACTTATT ACGTGAAGTT CAAAAAGTAT ACCGTATGCA AGGGGTAGAA ATTGGTGACA AACACGTAGA AGTAATGGTA CGCCAAATGT TACGTAAAGT ACGTGTGAGT GATGCAGGTG AAACAGATGT ATTACCAGGA ACATTACTAG ATATCCATCA GTTTACTGAT GCGAATGCGA AGGTGTTACT GCAAGGTAAA CAACCAGCAA CAGCTAGACC TGTTCTACTT GGTATTACAA AAGCTTCACT TGAAACAGAT TCATTCTTAT CTGCAGCATC GTTCCAAGAA ACAACTCGTG TCTTAACTGA TGCAGCGATT AAGGGTAAAC GCGATGAGCT TCTAGGATTG AAAGAAAATG TTATTATCGG TAAACTTGTT CCTGCTGGAA CAGGTATGAA TCGTTATCGC AAAGTGGATC TTGTTAAAAC TACACAAGAT GACATGAATG TAGAAAACGA TGAAGTTTAT GTGGAACAGT AA
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Protein sequence | MIDVNNFEYM KIGLASPDKI RSWSYGEVKK PETINYRTLK PEKDGLFCER IFGPQKDWEC HCGKYKRVRY KGVVCDRCGV EVTRAKVRRE RMGHIELAAP VSHIWYFKGI PSRMGLVLDM SPRALEEVIY FASYVVTESG DTPLDKKQLL SEKEYRAYRD RYGSTFQAAM GAEAIKKLLQ DIDLDKEVDF LKEELKTAQG QRRTRAIKRL EVLEAFRNSG NEPSWMILDV LPVIPPELRP MVQLDGGRFA TSDLNDLYRR VINRNNRLKR LLDLGAPSII VQNEKRMLQE AVDALIDNGR RGRPVTGPGN RPLKSLSHML KGKQGRFRQN LLGKRVDYSG RSVIVVGPNL KMYQCGLPKE MALELFKPFV MKELVEKGLA HNIKSAKRKI ERVQPEVWDV LESVIKEHPV LLNRAPTLHR LGIQAFEPTL VEGRAIRLHP LVCTAYNADF DGDQMAVHVP LSSEAQAEAR LLMLAAQNIL NPKDGKPVVT PSQDMVLGNY YLTLEREGAI GEGMVFKDAN EALLAYQNGY VHLHTRVAVA ASAVNNATFT EEQKNMLLLT TVGKLIFNEI LPESFPYINE PTNSNLEKET PAKYFVEKGA NIKEIIASRE EVAPFSKKIL GNIIAEVFKR FKITETSRML DRMKNLGFKY STKAGITVGV SDILVLGEKD EILHEAQAKV DNVIKQFRRG LITEEERYDR VISIWSNAKD VIQGKLMKSL NKRNPIFMMS DSGARGNASN FTQLAGMRGL MANPSGRIIE LPIKSSFREG LTVLEYFIST HGARKGLADT ALKTADSGYL TRRLVDVAQD VIVREDDCGT DRGLLIGAIK EGNEVIESLY DRLVGRFARK TVKHPETGEV LVAENQLITE DIAHIVENSG VETVNIRSAF TCNTRHGVCK KCYGRNLATG TDVEVGEAVG IIAAQSIGEP GTQLTMRTFH TGGVAGDDIT QGLPRIQEIF EARNPKGQAV ISEIDGVIAA INDVKDRQEV VVQGEVEART YAIPYGARLK VIPGQKISHG KELTEGSIDP KELLKVTDIT AVQEYLLREV QKVYRMQGVE IGDKHVEVMV RQMLRKVRVS DAGETDVLPG TLLDIHQFTD ANAKVLLQGK QPATARPVLL GITKASLETD SFLSAASFQE TTRVLTDAAI KGKRDELLGL KENVIIGKLV PAGTGMNRYR KVDLVKTTQD DMNVENDEVY VEQ
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