Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTOA0049 |
Symbol | |
ID | 1187339 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004633 |
Strand | + |
Start bp | 47811 |
End bp | 51980 |
Gene Length | 4170 bp |
Protein Length | 1389 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637408382 |
Product | DNA primase, putative |
Protein accession | NP_808707 |
Protein GI | 29171523 |
COG category | [S] Function unknown |
COG ID | [COG4643] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGATTG AAACAGCCCC TCGCACATCC GAATACCCGG TCTGGTTGGC AGTGCCGCCT GACGATCGTG AAAAAGCACG TCTGTCTGCT GGACGACTCA GTGACGGTCG TGCGGCTATT GCCTGGAACA AAGAAGAAAA GCTTTGGTTT GCCAGACCTG GATGTGACCT TGATCGCATC ACCGCCTGGT TGCCTGATCC AAGCCGCCGT GCCGGTGGTG GTGACGCCGA ATCAGAGTTT CTAGATGTAC TGACTCAAGC CGGCCTGGTG GTCAAAGGCA TGCCGGTGAT GGACGGTAGT CGGCAGCGTG TCGCGACGGT CGATGACAAG CACGGCAAGA AAAGCGGCGT CTATTGTGGC TTTCTGGATC GTCGCCCTGC AGGCTGGTTC ATCAACTACC ACCGTGCCGA TTCGCCCAAG GATGTAACCA ACTGGGCGGC GACTGGCGGT GAATCTGATC CGATCACCCG CCTGCACATT CGGGCCGGGG CCAAGCAAGC CCAGGAAGAC GCCGCTCGTG ATCGCGCTGT TACCTACGCC AAGCAGACGT TGGCTGCCAA GAGACTTTAC GACCGGCTGC CCGCCGCAGA CCCTGCGCAC CCCTACCTGG TGCGGAAGGG AATACCCCCG ACGCCCGACA TTCGTCAAAC ACGAAACGGT GCCCTGGTGG TGCCGTTTTT TAATGCCTCG GGAACGTTCA AGACGCTGCA GTACATCCCA CCCGAGGGTG AGAAGTTCCT CTTCAAGGAT GCCCCCAAAC AAGAGCATTT CCTGGTGGTG GGCGGCTCGC TCGATCCGGT CAACCCCATC CTGTATGCCG AGGGCTATGC CACTGCGCGC AGCCTGAACC TGGCCACCGG CCTGCCGGTG GTGATGACCA TTGACGCCGG CAACATGGTG GCGGTGGCCA AGGTGCTGCA TCAGCAGTAT CCCGACAGTC GGCACCTGTT CATGGCGGAT TTCGATCATG CCAAGGACGT GAACAAGGGG TTGATCATGG CCAATGAGGC GGCCATAGCG GTGGGGGGCC AGGTTCTGTA TCCAACGTTC AACGACGCCG AAATTGCCCG TGGGTTCACG GACTTCAACG ACCTTCACCA ATCACGAGGA CTGGACGCGG TGCGCGAACA GACCGCTCCC CTGATTCGAC CGTATGAAGA GGTAACTACC ATGCCGACAG ATTCGAACAC TCAGTCTCCG GACAATACTG CGCAAAAGGT AGCAACTCCC GCGCAAGAAA CGCTGGAACT GGATGCAGCG CCTGCAGCTT CAATACAGGT CCCGGATCAA TCCGCACCGC CGCAGACCCG TAGTGCTCAA CCGGTTGCAT CTGAAGCGTC ATCTGTTGAA AGCCAGTCGC CCGAAACTGC CCAGGTCACT GAAGCACCTG TTGGCATTGA TGATGCGCAG GTATCCACCC AGCCACCTTT GGCGTTGTCA CCTGCTGAGC AACTGGCGTC GGTAGAGGCC GATCCTGACG CTTCCGCGAT CGTTGACGAA CAGCCCAAAG CGACAATGTC TGTGGCGACA GACCGCAACA CGCCGTCTGA CGCGCCTGAA CTCACCCAGC CTACCTCGGC GGAGGTCGTG CCAGAGCAGT CTAACGAAAC CGCTCAACCA GATGCGCGCT CTGCTCAACA ACAGGCACCG GGAGAGGCCG ACCCAGGCTC TTCTGCCAAC GTGGATGATC AGAAGAGGGC GGCACCACCT GCGGCGACAG ACCAAGAAAT GTCCTCTGAC GCGCCTGTAC TCAACCAGCC ACCTTTGGCG GCGGCCGAGC CAGAGCAGTC GAACGAGACT GCTCAACAAC AGGCACCGGG AGAGGCCGAC CCAGGCTCTT CTGCCAACTT GGATGATCAG AAGAGGGCGG CACCACCTGC GGCGACAGAC CAAGAAATGT CCTCTGACGC GCCTGTACTC AACCAGCCAC CTTTGGCGGC GGCCGAGCCA GAGCAGTCGA ACGAGACTGC TCAACAACAG GCACCGGGAG AGGCCGACCC AGGCTCTTCT GCCAACGTGG ATGATCAGAA GAGGGCGGCA CCACCTGCGG CGACAGACCA AGAAATGTCC TCCGACGCGC CTGTACTCAA CCGGCCACCT TTGGCGGCGG CCGAGCCAGA GCAGTCGAAC GAGACCGCTC AACCAGCTGC GCCTCCTGCT AAACAACAGG CGTCAGTAGA GGCTGATCCT GACACTTCCC CCGTCGCTGA GGATCAACCG ATAATCGCAC CGGCAGGGCC TGCTCAAAAC GAAGACAATG AAAGCCTTTC AGACGTGGAG GTTCCGGTGT CAGGGGCCCT GCCGCGTCGT TTCACCACAG CACGCAAGAC CGGCCCGGCG GTCGTACCGG ATGCTATCTT CGTAGGGGCT CCGATAGGTG CCGACGAGCC ACAACTGCAA GCCAGCAACA TCGACAAAGA CGCTCTGTTG GCCCGCATCA GCCGTGAGGT TCAAGGTGAC AATTCGGTGC TCTACAAGCT CGATGCCGAG CCTGCTTTCG TTGACCGTGG GTCGCGCCTG GAGATGGTCC AAGGCGCAGG TCAGGAAGAT GAGAAGGTAA TAGCTGCGTT GCTCACGGCA GCACAGTTCT ACCGGGGGCG CATCGAACTG ACCGGCAGTG ACGAATTCAA GGCAAAAGCC ATCGAGCTGA TTGCTCAGCA CCAGATCAAT GTGGAGATGA AGAACCCTGC GCAGCAAATG TTGCTGGACG ATGCCCGTAA CGCGTTGAAG CAGCCACCTG TAACGCTTGA TGCCATTCAT GGTGATACCC CACCGCCGTA TGGTGGTCCA CAGCCGTCAC AGGCGAAGCC CTCGGCACCG CAACCTCAAC AAGCCGCGCC GGCACCGGTG CATTCGTCTG CGCCCGCGCC GGCGAGTACC GCTTACCAGC CTCTGGAGGT TGAGGGTCTG CAACGGCGGC CGGCTCAATC TGCCCCACAG GCACAGGCCC CGCAAGCGGG CGTTGCACCG CAACCTCAAC AAGCCGCGCC GGTACATTCG TCTGCGCCCG CTTCGGCAAG TACTGCTTAT CAGCCGCTGG ACGTTGAGGG TCTGCAGCGG CCACTGGTTC AACCTGCACC ACCGGCACAG CCGGACGCAC CGGTCATCAA TCCGCCCTCG GCAGCTCCAG CATCGGATCA GCCTGCAACG TCAGCGAATC AGCAGGTGTC GCCCGCCATC CATCAGCCTT TCCAGGCGGC CAAGGATGGC GTGACAGGCA AGATCCTCAA ATTTGGCCAG AAGCCGTTTC GTTTTGAGCC AGACAAGCCC GAGAGCACCT TCATCACACT GCGTACCGTG AACGGTGTTC AGACTTTTTG GGGCAAGGAG CTGGCGGGGC TGCTGCGCCA AACCCGTGTG CAGCCAGGCA AGATGGTGAC GTTGCAGTGG CTGGGCAATC ATCCGGTTAC CGTCAAGGTG CCCCGCAAAA ACGAGCAGGG CGTCACCGTG GGTTACGACG ATAAAGACGT TCATCGCAAC CAATGGGCCC TTAAGGTAGA GGGTAACCCC GCAGTGCGTT CTGGCCAGGA TGAGGGCGTC AAACTCGGCG CCTATGACGC CGGGCGTTTC GCCGTGGTGC AACAAGCCTG GCTTGCGCAA CTGGGCGTGG AGGCTCCCTT GCCCACGCCA CCCACGGATG GCCTGTATTG GTTGACCCCA AACGGTGAAG GCAGCGCAAA AACGGGTGAT GAGCTGTCAG CCCCTCGGCC GCCGATCGAC CCCAACAACA CAGCGGGACA ACCCGTCATC AGCAGTTGGT CACGGGATGG CCATCTGGAC ATGTACCTGG TGCGCGGCGA TGGTCCCTAT CTGCAAGGTG TGGTGCGTCA GGGGGATCAG ATGCAGCATG TATTGGTGAG TCTTCCAGGC CGTGACGATG GGCCTTCGAT GGTGTTTAAC GCCATTACCC CCGAGGGACT GCTGCCGATC GGCACGGGCA ATGGCATCAA CCGCTCTGGT GGCGAGCCGG TGTCGAGAGA GCACATTGCC TTCAAGCTTG AAGGCGACAG CGCTGTGCGC ATTGGCAAGC TTGATGCGCC TGGCGAGGTG CCCCCGACCT TGCACAACCT ATTGGGCTTC GATCAGCGCT GGAAAGAGGA AAACACCCTC CCAAAGTCAG CTCCCACAGC GGCACCGTCA GTACAGCCGA GCGATCCACG TCCGGTGTAA
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Protein sequence | MKIETAPRTS EYPVWLAVPP DDREKARLSA GRLSDGRAAI AWNKEEKLWF ARPGCDLDRI TAWLPDPSRR AGGGDAESEF LDVLTQAGLV VKGMPVMDGS RQRVATVDDK HGKKSGVYCG FLDRRPAGWF INYHRADSPK DVTNWAATGG ESDPITRLHI RAGAKQAQED AARDRAVTYA KQTLAAKRLY DRLPAADPAH PYLVRKGIPP TPDIRQTRNG ALVVPFFNAS GTFKTLQYIP PEGEKFLFKD APKQEHFLVV GGSLDPVNPI LYAEGYATAR SLNLATGLPV VMTIDAGNMV AVAKVLHQQY PDSRHLFMAD FDHAKDVNKG LIMANEAAIA VGGQVLYPTF NDAEIARGFT DFNDLHQSRG LDAVREQTAP LIRPYEEVTT MPTDSNTQSP DNTAQKVATP AQETLELDAA PAASIQVPDQ SAPPQTRSAQ PVASEASSVE SQSPETAQVT EAPVGIDDAQ VSTQPPLALS PAEQLASVEA DPDASAIVDE QPKATMSVAT DRNTPSDAPE LTQPTSAEVV PEQSNETAQP DARSAQQQAP GEADPGSSAN VDDQKRAAPP AATDQEMSSD APVLNQPPLA AAEPEQSNET AQQQAPGEAD PGSSANLDDQ KRAAPPAATD QEMSSDAPVL NQPPLAAAEP EQSNETAQQQ APGEADPGSS ANVDDQKRAA PPAATDQEMS SDAPVLNRPP LAAAEPEQSN ETAQPAAPPA KQQASVEADP DTSPVAEDQP IIAPAGPAQN EDNESLSDVE VPVSGALPRR FTTARKTGPA VVPDAIFVGA PIGADEPQLQ ASNIDKDALL ARISREVQGD NSVLYKLDAE PAFVDRGSRL EMVQGAGQED EKVIAALLTA AQFYRGRIEL TGSDEFKAKA IELIAQHQIN VEMKNPAQQM LLDDARNALK QPPVTLDAIH GDTPPPYGGP QPSQAKPSAP QPQQAAPAPV HSSAPAPAST AYQPLEVEGL QRRPAQSAPQ AQAPQAGVAP QPQQAAPVHS SAPASASTAY QPLDVEGLQR PLVQPAPPAQ PDAPVINPPS AAPASDQPAT SANQQVSPAI HQPFQAAKDG VTGKILKFGQ KPFRFEPDKP ESTFITLRTV NGVQTFWGKE LAGLLRQTRV QPGKMVTLQW LGNHPVTVKV PRKNEQGVTV GYDDKDVHRN QWALKVEGNP AVRSGQDEGV KLGAYDAGRF AVVQQAWLAQ LGVEAPLPTP PTDGLYWLTP NGEGSAKTGD ELSAPRPPID PNNTAGQPVI SSWSRDGHLD MYLVRGDGPY LQGVVRQGDQ MQHVLVSLPG RDDGPSMVFN AITPEGLLPI GTGNGINRSG GEPVSREHIA FKLEGDSAVR IGKLDAPGEV PPTLHNLLGF DQRWKEENTL PKSAPTAAPS VQPSDPRPV
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