Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTOA0010 |
Symbol | |
ID | 1187317 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004633 |
Strand | - |
Start bp | 11224 |
End bp | 14193 |
Gene Length | 2970 bp |
Protein Length | 989 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 637408345 |
Product | Tn3 family transposase |
Protein accession | NP_808670 |
Protein GI | 29171486 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4644] Transposase and inactivated derivatives, TnpA family |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCACGTC GCTCGATTCT TTCCCTTGCG GAGCGGGAAA GCTTACTGGC GTTGCCAGAT TCCCAAGATG AAATGATTCG TCACTACTCT TTCAGCGAAA CCGACCTCGC CATCATCCGC CAACGGCGTG GGTCTGCAAA TCGGCTGGGC TTCGCTGTAC AGCTCTGTTA CATGCGCTAT CCCGGGGTAA CACTTGCTAT GGATGAAGAA CCATTCGAGC CATTGCTGCG CTTGGTGGCC ACGCAACTGA AGGTGCCGCC TGAAGCATGG GCTGACTATG GGCAACGCGC CGAGACGCGC CGCGAGCACC TGTTGGAATT ACAAGCTCTT TTTGAGTTTC AGCCATTCAC AACAAGACAT TATCGTCCCT GCGTTCATAG TTTGGATGAA CTGGCATGGC AGTCCGACAA AGGCTTCGTG TTGGCGACGG AGTTGGTTGA AGGGTTGCGA CGACAGAACA TATTGCTTCC ATCACCAGGT GTGATCGAGC GCATTTGTGC TGAGGCAATC ACCCGCGCCA ATCGGCGGAT CTATGAAGCC TTGTCCGAGC CTCTTTCGAA TACACACCGC CGTTGCCTCG ATGGCCTCCT TAGACGCCGA GACAAAGGCC AGACCACCTG GTTGGCCTGG TTACGCCAGT CGCCAGTTAA ACCGAACTCA CGGCACATGC TTGAACACAT CGAGCGCCTC AAAGCATGGC AGGCTCTCGA TCTACCAGCA GGCATTGAGC GGCTGGTTCA CCAGAATCGC CTGCTCAAAA TTGCCCGTGA AGGCGGCCAA ATGACACCTG CTGACTTGTC CAAGTTCGAA TTGCAACGAC GCTACGCTAC CCTTGTGGCA CTGGCCATCG AGGGCATGGC CACCGTCACT GACGAAATCA TCGACCTGCA CGATCGTATC CTGGGCAAGC TGTTTAACGC AGCCAAGAAT AAACACCAGA AACAGTTCCA GGCATCCGGA AAAGCGATCA ACGCAAAGGT GCGAATTTAT GGACGCATCG GCCAAGCCCT GCTGGAGGCC AAGCAAAACG GCTGCGATCC GTTTGCTGCC ATCGAAGCGG TCATGTCTTG GGAGGCTTTC GCCAAGAGTG TCACCGAAGC GCAAAAACTT GCACAGCCCG AAGACTTCGA CTTCCTGCAC CGCATCGGCG AGAGCTACGC CACGTTGCGC CGCTATGCTC CGCAGTTTCT CGACGTACTC AAGCTGCGGG CTGCGCCCGC AGCCAAGGAC GTGTTTGAAG GCATTGAGGT ATTGCGCGCA ATGAACACTG ACAACGCCCG TAAGGTTCCC GTCGATGCCC CGATCGGGTT CATCAAGAAG CGCTGGAAGA AACTGGTTAT AACCGACGGC GGTATCGACC GGCGCTACTA CGAACTGTGC GTGATGTCGG AACTAAAGAA CGCGCTGCGC TCTGGAGATA TTTGGGTGCA GGGATCGCGT CAGTTCAAGG ACTTCGAGGA TTACCTGATG CCATCCGAGA AATTCGCCCA TCTCAAGCTG GCCCATGAAT TGCCTCTGGC CGTAGCCACC GACTGCGACA AATACCTGAA CGACCGGTTG ACGCTGTTGG AAGCTCAGCT TGCCACCGTG AACCGCATGG CTCTAGCCAA TGACTTACCG GATGCCATCA TCACCGAGTC TGGTTTGAAG ATCACGCCTC TGGATGCGGC AGTGCCAGAT ACCGCACAGG CGTTGATTGA TCAAACCGCA ATGGCTATGC CGCATATCAA GATCACCGAA TTGTTGTTGG AGGTGGACGA GTGGACAGGA TTCACCCGGC ATTTCGCACA TCTGAAATCG GGTGACCTGG CCAAGGATAA GCACTTACTG TTGTCCACCA TCCTGGCTGA TGCGATCAAC CTAGGCCTGG CTAAAATGGC CGAGTCTTGC CCTGGCACCA CCTACGCAAA ACTGTCCTGG CTACAAGCCT GGCACATCCG TGACGAAACC TATTCGGCCG CGCTGGCTGA GCTAGTAAAC GCGCAGCTCC AACATCCTTT TTCCAAGCAT TGGGGTGACG GTACCACATC ATCGTCAGAT GGACAGAATT TCAGAACTGG CAGCAAAGCC GAGAGTACGG GTCACATCAA TCCCAAATAC GGCAGCAGCC CGGGACGAAC TTTTTACACC CACATTTCTG ACCAGTACGC CCCGTATCAC CTGAAGGTGG TCAACGTTGG CGTGCGCGAT TCTACCTATG TGCTTGACGG GCTTCTGTAT CACGAATCTG ACCTGCGTAT TGAGGAGCAC TACACGGATA CTGCGGGCTT CACAGATCAC GTCTTCGGTC TGATGCATTT ACTGGGTTTT CGCTTTGCAC CGCGCATCCG CGACCTAGGC GATACCAAGC TGTTCGTGCC CCAAGGAAAT ATCGATTATG ACGCGATTAA GTCAATGATT AGTAAAGAAA AACTGGATAT CAAGGCCATT CGGACGCACT GGGATGAAAT TCTGAGGCTG GCCACCTCGA TCAAACAAGG TACCGTGACT GCCTCGCTGA TGTTGCGCAA GCTGGGTAGT TATCCTCGGC AGAACGGCTT AGCCGTTGCC CTTCGCGAAA TCGGTCGCAT CGAACGCACG CTGTTCATTT TGGACTGGCT ACAAAGTGCC GAGCTGCGCC GTCGTGTGAA TGCAGGACTG AACAAGGGCG AAGCGCGCAA TGCGCTGGCC AGGGCTGTCT TCTTTAACCG GCTGGGCGAA ATCCGAGACC GTAGCTTCGA ACAGCAACGC TACCGTGCCA GCGGCCTCAA CTTGGTGACT GCTGCAATAG TGCTGTGGAA CACGGTTTAC CTGGAGCGGT CCGCAAACGC ATTACGCGGA CATAGCACCG CTGTCGATGA ATCGCTGCTG CAGTACCTGT CGCCGCTGGG CTGGGAGCAC ATCAACCTAA CTGGTGATTA CCTGTGGCGC AGCACCGTCA AGGTTGGTGG AGGAAGATTC CGGCCATTAC GACGACTGAA ATCAGCTTAA
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Protein sequence | MPRRSILSLA ERESLLALPD SQDEMIRHYS FSETDLAIIR QRRGSANRLG FAVQLCYMRY PGVTLAMDEE PFEPLLRLVA TQLKVPPEAW ADYGQRAETR REHLLELQAL FEFQPFTTRH YRPCVHSLDE LAWQSDKGFV LATELVEGLR RQNILLPSPG VIERICAEAI TRANRRIYEA LSEPLSNTHR RCLDGLLRRR DKGQTTWLAW LRQSPVKPNS RHMLEHIERL KAWQALDLPA GIERLVHQNR LLKIAREGGQ MTPADLSKFE LQRRYATLVA LAIEGMATVT DEIIDLHDRI LGKLFNAAKN KHQKQFQASG KAINAKVRIY GRIGQALLEA KQNGCDPFAA IEAVMSWEAF AKSVTEAQKL AQPEDFDFLH RIGESYATLR RYAPQFLDVL KLRAAPAAKD VFEGIEVLRA MNTDNARKVP VDAPIGFIKK RWKKLVITDG GIDRRYYELC VMSELKNALR SGDIWVQGSR QFKDFEDYLM PSEKFAHLKL AHELPLAVAT DCDKYLNDRL TLLEAQLATV NRMALANDLP DAIITESGLK ITPLDAAVPD TAQALIDQTA MAMPHIKITE LLLEVDEWTG FTRHFAHLKS GDLAKDKHLL LSTILADAIN LGLAKMAESC PGTTYAKLSW LQAWHIRDET YSAALAELVN AQLQHPFSKH WGDGTTSSSD GQNFRTGSKA ESTGHINPKY GSSPGRTFYT HISDQYAPYH LKVVNVGVRD STYVLDGLLY HESDLRIEEH YTDTAGFTDH VFGLMHLLGF RFAPRIRDLG DTKLFVPQGN IDYDAIKSMI SKEKLDIKAI RTHWDEILRL ATSIKQGTVT ASLMLRKLGS YPRQNGLAVA LREIGRIERT LFILDWLQSA ELRRRVNAGL NKGEARNALA RAVFFNRLGE IRDRSFEQQR YRASGLNLVT AAIVLWNTVY LERSANALRG HSTAVDESLL QYLSPLGWEH INLTGDYLWR STVKVGGGRF RPLRRLKSA
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