Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTOA0005 |
Symbol | hopAM1-2 |
ID | 1187312 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004633 |
Strand | - |
Start bp | 5731 |
End bp | 6561 |
Gene Length | 831 bp |
Protein Length | 276 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 637408341 |
Product | type III effector HopAM1-2 |
Protein accession | NP_808666 |
Protein GI | 29171482 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 54 |
Plasmid unclonability p-value | 0.77538 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCACGCAA ATCCTTTAAG CTCTTTCAAC AGAGCTCAAC ATGGCAATCT GACTAATGTA GAGGCCAGCC AAGTTAAATC GGCAGGAACC TCTTCCACCA CTAATATAGA CAGTAAAAAC ATTGAAGAAC ATGTTGCAGA CAGACTCAGT GATTTAGGCA GACCTGATGG TGGATGGTTT TTCGAGAAGT CACTTGGCAC CTTGAAAAAT TTAAATCTTG AGCAGTTAGC CGGAATCCAT GATGTACTAA AATTAACAGA TGGCGTAAAG AACATTGTCT CTTTTGGAGC TCGGGAAGGA GGCTTCGAGT TGGCAATGCA GTTTCGTCAT GATTTATACA GATCTCAACA TCCGGATGAA AACTCGCCGC ACGATGCCGC AACTCATTAT CTTGATGCAA TCAGCCTGCA ATCAAACAAA TTTACAAAAC TTGAAAAACT ACAACATGTA GATGTATTTA AAATGCAAAA CCCGTTTTGG GATGTCGGGT ACAAAAACGG AATTGCGCAC GCAAAAAAAA TGGCATTCTT CATAACGCCA GAGTGGCTGG GTTCTGATTT CTGTAAACAG GAATTCCAGT GGCTTAGCGA AACAAAAAAC AAAGACATAA AATCTGCATT TGTGATCTTT AAAGATGTAG ACTTAAAAAG CAAAAATATG ACAAGTATCT TCAATTTTGC AGACTTCCAT AAATCACGCG TCATGATGGC AAGCACACCT CCCGAATCGG GATTGAATAA TGTAAAAATC GAAAATAGCG TTGACCTGAA TTTCAAGAGG TTATTAACTG ACCGTGAGTC ATGGGAACTA AATAATTTCC TAGGCGACTA A
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Protein sequence | MHANPLSSFN RAQHGNLTNV EASQVKSAGT SSTTNIDSKN IEEHVADRLS DLGRPDGGWF FEKSLGTLKN LNLEQLAGIH DVLKLTDGVK NIVSFGAREG GFELAMQFRH DLYRSQHPDE NSPHDAATHY LDAISLQSNK FTKLEKLQHV DVFKMQNPFW DVGYKNGIAH AKKMAFFITP EWLGSDFCKQ EFQWLSETKN KDIKSAFVIF KDVDLKSKNM TSIFNFADFH KSRVMMASTP PESGLNNVKI ENSVDLNFKR LLTDRESWEL NNFLGD
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