| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTOA0001 |
|---|
| Symbol | repA |
|---|
| ID | 1187308 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004633 |
|---|
| Strand | + |
|---|
| Start bp | 351 |
|---|
| End bp | 1664 |
|---|
| Gene Length | 1314 bp |
|---|
| Protein Length | 437 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637408337 |
|---|
| Product | replication protein RepA |
|---|
| Protein accession | NP_808663 |
|---|
| Protein GI | 29171479 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 52 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCACG ACAACGCGAT CAGTCTTGCC CTCGCGACCT CATCCACGGC CAACACCGAT
CCGCTGGCCA GCAGCACCCA CCTGCCGCCT GCCCGTTTCT TCGAAGACGG CACTGCGCTC
AACCGGTTAT TGCTGGAAGC GCCGTACATG GCGCGGTGCA GTGACGACAA AACCGCGACT
CGCGTCCGTC CTCGTGAATA CGCGCTGCGT TATCCCTATA TGCAGGTCAA TCGCCCCGGC
ATGGTGTCGT GGCTGGTGTT CGACCTCGAC CATGCCAACG CCTTGGCTTG GGACGATGCC
GGGTTGCCCG CGCCGAACCT GATGGTGCGC AACCGCAAAA GCGGCCATTC CCAGTTGTTC
TATGCCGTGC CGTCCGTATG CACGACAGAG AATGCACGGG CCAAGCCGAT TCAGTACATG
AAGGCGATCT ATGCCGCGTT TGCCGCTCGC CTCGACGCGG ACGTGGACTA CCACGGTGGC
CCCGTGGCCA AAACGCCCGG CCACCCTTGG TGGGAGACGA CCGAATTTCA CAGCCACGTG
TATGAACTGG GCGAACTGGC GAGCGCGGTG GAGTTGACCG TCAAGCCGTG GGCCACCGGC
CCCAAGCTGG ACCAGGTCAG CCATTCGCGG CACTGCATCC TGTTCGAGCA GCTGCGTTAT
TTTGCGTACA GCATCGTCAA TCGCGAGCGC GAGCTGGGTT CGTTTGAGTC GTTCATGCGC
TCGCTCGATG CGTATGCCTA CAACCACAAC AGCTTTCTAA AACAGGGGTT TTCGGAAAAC
CTGCCCCTGT CGTCGATACG CGCCACGGTC AAATCCGTAG GCCGCTGGAC GTGGGATCGG
TACACCGGTG ATCGTCGCTG CCATCGAGGC GCAATGCAGC TCGATGGCAG CCTGTCGCTC
ACCGAGCGGC AGAGCCTGGC GGCCAGGCGC ACCCATGAAC TACGACACAA AGCCACAGAA
TCGAAGATAC GCGCCGCGTG CCGACAGCTT CAAGACCAGG GCAAGGCGCT GGTACGTTCT
GCCATTGCAA CACTCGCCGG CGTTTCGGTG AGAACGGTGG CCAGCTACAC GCACATCCTC
ACTGAAGTGG CTCAACCGAC CACTGTGAGC GTTCTCAAGG TCAGCCGTAA GGCTGTGCCC
ATGCAACCTA AGCAAGATCG CTCACCCGCT ACCCCACCTG TTCGGGCCCC CGTTGGTCAG
CCTGCTGATG GCCGCGCTTC GGGTGTGCAA CATGGTGTAC ATCAGATATC TGCGGTCACG
CAGGGGCCGC AAGCTGGAGA GCCCTTAAAA ACAGAACATG AGGATGGTTC ATGA
|
|---|
| Protein sequence | MSHDNAISLA LATSSTANTD PLASSTHLPP ARFFEDGTAL NRLLLEAPYM ARCSDDKTAT
RVRPREYALR YPYMQVNRPG MVSWLVFDLD HANALAWDDA GLPAPNLMVR NRKSGHSQLF
YAVPSVCTTE NARAKPIQYM KAIYAAFAAR LDADVDYHGG PVAKTPGHPW WETTEFHSHV
YELGELASAV ELTVKPWATG PKLDQVSHSR HCILFEQLRY FAYSIVNRER ELGSFESFMR
SLDAYAYNHN SFLKQGFSEN LPLSSIRATV KSVGRWTWDR YTGDRRCHRG AMQLDGSLSL
TERQSLAARR THELRHKATE SKIRAACRQL QDQGKALVRS AIATLAGVSV RTVASYTHIL
TEVAQPTTVS VLKVSRKAVP MQPKQDRSPA TPPVRAPVGQ PADGRASGVQ HGVHQISAVT
QGPQAGEPLK TEHEDGS
|
|---|
| |