| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_B0066 |
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| Symbol | traU-1 |
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| ID | 1187444 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004632 |
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| Strand | + |
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| Start bp | 53554 |
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| End bp | 56610 |
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| Gene Length | 3057 bp |
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| Protein Length | 1018 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637408325 |
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| Product | traU protein |
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| Protein accession | NP_808651 |
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| Protein GI | 29171605 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.865 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGAGCT TGATCCGTTG GGTTGAAGAC CTGATCACAG AAACCTCCCG GTTTGCCGTA
TCACGCGATC TGCCCGACTA TTGCGACTTG AACACGGTAC TGCGTCTGAC GGACGACGAT
CGCACTCGCC ACCCAGCCCT CAATGCCCCG TATGTACTGG TCAACGACGA TGGCGATTAC
TGCTCGGTGT ATGCCGTTGC CGGCAGTTTT TGTGACACCG ACGAAGCGGC ACCCCTGGAG
GCCCCTTATT CCTGGGCCGG CCGCTTGGAG CGCATGATGC ATGCGCTGAC AGCCCACTAT
CGCCGACATG GACACAAAAT CAGCCTGGTG TTCGATGATG ACCCTGATCG AGGCCGCGAG
GACGTCGAAC GCCTGCTGGC CCCTCAGTAC GCTTCTGTCA AAAGGACCGG CATCGACTTG
ACGCCGATCC TGGACGAAAA CGTTGAAAAG CTGGCCCCCT GGGTTTCGCG CGAACGCTGC
TACCTGGTGT GTTACACCGG GCGCAAGACG CTCTCGGCGC ATGAACTGAT TGACGAAAAT
CGCCGTATCA AGCAATTGAT CGGGCAAAGC CCGGATGCAC GGTATGGACA AAATCCGGTC
CTGGCTGAAA TGGCCGGCCT GAAAATTCGC CACGACGCCT TCATGAGCGC TGTGGAAGCT
GCCTTTAAAG ATGACGGCCA GGGTGTGCTG CTGGAACTGC TCGATGCCCA TGCAGTGGGC
CAGGCGCTGC GCTCTCAAGT GGACCGGCTC GGTACCAGTG AGCATTGGTA CCCGCTGCTC
CCTGATGATC CGATCACCCC GCACGGTGTA CGTAACGGCG ACGATCACAC ACCGTTTCTG
GCCCCGCAGC TGAAGTTTCA GCTGATGAAC CAGGACATGG AAACCAACGG CAACAAGCTC
TGCGTCAATG GGATGTGGCA TGGGACCTTG TCTGTAGTCC TGGGGCCGCA GACGCCGCAG
ACCTTTGCCA AGCTCAAAGC GCTGGTCCCT CGCGGCGTGC CTTGGCGCGT ACGCATGGAC
CTGATGCCTG GAGGCATGAA GTCGCTGGGC ATGAAAAAAG GCACGTTGGA CTTCATGGCG
TTTGTGCCGC CGCTTCGCCC CATCTGGAAC TCCATCGAAA CGTTGACGAA AGTCGAGCAG
CAGGAGCCGG TGTGTGTCAT GACGATCATG GCATCGACCT GGGGAGACAG CCAGGCCGCA
GTGACGCGCC ATCTGACGCT GCTGACCCAG GCCTTTCAGG CCTGGGGGGT GTGCGAGGTG
ACGCAAACCT TCGGCAACCC GGTACGCGCA TGGGCCTCGA CGCTGGTGGC TTCCAGCAAA
GGCAGTGGCC CGAACCTGTT GTATCCGCCG CTTTCAGAGG CGCTGAACCT GTTGCCGCTG
ACCCGCCCTG CCTCGGCTTG GGAGGAGGAC GGCAACGCCT TGTTCGCTAC GCTCGATGGC
AAGCTCTATC CGGTCGGTCT GGCCACCCCC AAGCAGAACA AGCTCACCAG TGTGGTCACC
GGCTCTTCCG GCCAGGGCAA GTCGGTGCTG CTGAACAAGC TGGGCAATGT CACGGTGTCC
AGCGCCCAGC AGCGATTACC GTTCATGGCG GGGGTGGACA AAGGTTTCTC GATGCAAGGT
CAAGTCGCCT TGCTGCGCGA CAGTCTGCCG CCGGAGCGTA AGGACGAGGT GGTGGGCATT
GTGCTGCAGA ACAGCCCCAA GCATTGCCGG AACCTGTTCG ATATCCAGCT GGGCGCGCGG
TTTCCGATCG CCCCCGAGCG TAACTGGATC ATCAGCATGC TCACGGCCAT GTGCATTGAT
CCCTCTACCG GCAATCCGCC AAACGAACGC GATACCCGGC AAATACTGGA CCGCGTCATC
AGCATGGCCT ATACCGCCAA TGCCGAAAAA AGCCCCAGAC GCTGGGGGCG CGGGGTCGTC
CCCGAAGTGG ACACTGCCTT GGATAAAAGC GGGTTGATCG AGCGCTATCC GGCCCAGTGG
TGGGATAGCA GTACCTGGTA TGAGGTGCGC GATCTGTTGT TTGAAGCAGG CTTTGTTAAG
GAAGCGCAGC TGGCCCAGTT CGAAGCGGTG CCGGAACTGG CCGACATGAC CACCTTCCTG
AACCATGAAG ATGTACAGAG CGCCTATGGT CGGGTGCAAC GCGATGGCAG TCAGGAGCTG
TTGCTGGAGT ACTTGCACCG ATGCATGACT GACGCCTGTA GAGAATTCAA GATGCTGGCC
GGGCGTACGC AGTTCTTGAT CAGTCCACGC ACGCGAGTGA TCGCGATCGA TCTGAACAAT
GTCATGGGTG ATAACACCAC CAATGCTGGC CACCTGAAAA CCGGAATCAT GTTCCTGTTT
GCGGGCCAGG TGGCGGGGGG AGATTTTGTG TTGCCGCAAT ACCGGGATGA GCTGTTGGAG
GCGGTGCCCA CGCTTTACCA CCCCATGCAT CTCGACCGCT TGGAGCAGCT GGATCAGGAG
GTCAAAACCA AGATCTACGA CGAGCTGCAC AATGCGAAAC AGGTGCCCTT CATCTTTCCC
ATGCTGGAAA CCCAGGACCG TGAGCAACGC AAATTCGGCA TACGCACGGT GTTGTCCTCG
CAGTACGTGA GCGACTTTCC CGACGCCATT CTGAATTCGG CCAACTCGCT GTACATGATG
GAAGTGGACC CCAAAGACGA GAAGCTTCTG ACCGACACCA TCAAAGTGCC CAAGGTCACT
CTGCAGCGCT TTCAGCGTTT GGGCTCAGGT CCAGCAGCGG ATGGCAGCGG CGTACCGTTT
TTGGGCGTGT TCCGAATCAA GGGTGGCGGC ACCCTGGCGC GCATTCTGAA AAACGCCATG
GGCCCCCTGG AGCTATGGGC GTTGGGCTCT TCACCGACCG ACAGCGCCCT GCGCAGGTTG
CTATATGACG CCGTCGGCGG TGCCACGGCT CGCGCCATCC TGGCCGAAGC CTTTCCCCAG
GGCACGGCAG AAAAACTCAT CGCGCTGCGC CAGAAGCAAG CGGGTGAAGC GGATTCCAAT
AACGTGATTG GCACGCTGGC CAACGAGTTG ATCAAACGGC GCGGCTACAA CATTTGA
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| Protein sequence | MPSLIRWVED LITETSRFAV SRDLPDYCDL NTVLRLTDDD RTRHPALNAP YVLVNDDGDY
CSVYAVAGSF CDTDEAAPLE APYSWAGRLE RMMHALTAHY RRHGHKISLV FDDDPDRGRE
DVERLLAPQY ASVKRTGIDL TPILDENVEK LAPWVSRERC YLVCYTGRKT LSAHELIDEN
RRIKQLIGQS PDARYGQNPV LAEMAGLKIR HDAFMSAVEA AFKDDGQGVL LELLDAHAVG
QALRSQVDRL GTSEHWYPLL PDDPITPHGV RNGDDHTPFL APQLKFQLMN QDMETNGNKL
CVNGMWHGTL SVVLGPQTPQ TFAKLKALVP RGVPWRVRMD LMPGGMKSLG MKKGTLDFMA
FVPPLRPIWN SIETLTKVEQ QEPVCVMTIM ASTWGDSQAA VTRHLTLLTQ AFQAWGVCEV
TQTFGNPVRA WASTLVASSK GSGPNLLYPP LSEALNLLPL TRPASAWEED GNALFATLDG
KLYPVGLATP KQNKLTSVVT GSSGQGKSVL LNKLGNVTVS SAQQRLPFMA GVDKGFSMQG
QVALLRDSLP PERKDEVVGI VLQNSPKHCR NLFDIQLGAR FPIAPERNWI ISMLTAMCID
PSTGNPPNER DTRQILDRVI SMAYTANAEK SPRRWGRGVV PEVDTALDKS GLIERYPAQW
WDSSTWYEVR DLLFEAGFVK EAQLAQFEAV PELADMTTFL NHEDVQSAYG RVQRDGSQEL
LLEYLHRCMT DACREFKMLA GRTQFLISPR TRVIAIDLNN VMGDNTTNAG HLKTGIMFLF
AGQVAGGDFV LPQYRDELLE AVPTLYHPMH LDRLEQLDQE VKTKIYDELH NAKQVPFIFP
MLETQDREQR KFGIRTVLSS QYVSDFPDAI LNSANSLYMM EVDPKDEKLL TDTIKVPKVT
LQRFQRLGSG PAADGSGVPF LGVFRIKGGG TLARILKNAM GPLELWALGS SPTDSALRRL
LYDAVGGATA RAILAEAFPQ GTAEKLIALR QKQAGEADSN NVIGTLANEL IKRRGYNI
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