Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_B0057 |
Symbol | |
ID | 1187435 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004632 |
Strand | + |
Start bp | 42922 |
End bp | 47595 |
Gene Length | 4674 bp |
Protein Length | 1557 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637408317 |
Product | DNA primase TraC |
Protein accession | NP_808643 |
Protein GI | 29171597 |
COG category | [S] Function unknown |
COG ID | [COG4643] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01222] septum site-determining protein MinC |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGTTAA CCATTGATCA TGCGAAAAAG TTAGTGATTG AATTCTGTGC GACCTACCCG GTAGCGTCCA CCATCAGCTA CAAGATCAGA GAAACCCAGG AGGAGCTTTA TGGACCGCAA GCCACCCGAG AAGCCGCTGG AATCATCCTC GGTTCATTTC GTCCAGGAAG AGGACGAGCC GAATTTGCCA TTTCCAACTT TCGTGACGAG GACCACTTTA GAAGAACTCT TAGGCACGAA ATACTCGGAC ATTATGGGAT CAACACCTTC AACCCCGCCG AAAAACGAGC GGTCCTAGAA GGCGTCATCC AGTCACGCAA TGATCCGGGC ATGGCTGCTC TCTGGGCTGA GGTTGCCAGG ATTTATCCTC AGTTGACTGA CTCAATGAAG GCAGAGGAAG TTTTTGCTTT TGCCTGTGAA AGGATTGTTT CACCAATCCG TGGCAACGTT GCCGAGGGTG CCCGTTCTTT TCGCGAAACC TGCATAGAGC GTACGCGTGC GATGCAGGTC AGTGACCTCA TCAACCTCAC GACGATGGTG GCCGAAGGGT TGCACGACCG CAGCCGGTCG CAACAGAACT TCCCAGCGTC GGACAATGCC CAGTTCAAGA TCGAAACAGC CCCTCGCACA TCCGAATACC CGGTTTGGCT GGCCGTGCCG CCTGATGATC GTGATAAGGC TCGACTGTCT GCCGGACGAC TCAGTGACGG TCGTGCGGCC ATTGCCTGGA ACAAAGAGGA AAAGCTGTGG TTTGCCAGAC CTGGATGTGA CCTTGATCGC ATCACCGACT GGTTGCCTGA TCCAAGCCGC CGCGCTGGGG GAGGGGACGC CGAATCAGAG TTTCTGGATG TACTGACTCA AGCCGGCCTG GTCGTCAAAG GCATGCCGGT GATGAACGGT AGTCGGCAGC GTGTAGCGAC GGTCGATGAC AAGCACGGCA AGAAAAGCGG TGTCTATTGC GGTTTTCTGG ATCGTCGCCC TGCTGGCTGG TTCATCAACT ACCATCGTGC CGATTCGGCC AAGGATGTGA CCAACTGGGC GGCGACTGGC GGTGAGTCTG ATCCGATCAC CCGCCTGCAC ATTAGGGCCG GGGCCAAGCA AGCCCAGGAA GACGCTGCTC GTGATCGCGC CGTCACCTAC GCCAAGCAGA CGTTGGCTGC CAAGAGGCTT TACGACCGGC TGCCCGCCGC AGACCCTGCG CATCCCTACC TGGTGCGAAA GGGAATACCC CCGACGCCCG ACATTCGTCA AACACGAAAC GGTGCCCTGG TGGTGCCGTT TTTTAATGCG TCGGGAACGT TCAAGACGCT GCAGTACATC CCACCCGAGG GTGAGAAGTT CCTCTTCAAG GATGCCCCCA AACAAGAGCA TTTCCTGGTG GTGGGCGGCC CGCTCGATCC GGTCAACCCC ATCCTGTATG CCGAGGGCTA TGCCACGGCG CGCAGCCTGA ATCTGGCCAC CGGCCTGCCG GTGGTGATGA CCATTGACGC CGGCAACATG GTGGCGGTGG CCAAGGTGCT GCATCAGCAG TATCCCGACA GTCGGCACCT GTTCATGGCG GATTTCGATC ATGCCAAGGA CGTGAACAAG GGGTTGATCA TGGCCAATGA GGCGGCCATA GCGGTGGGGG GCCAGGTTAT GTACCCAACG TTTAACGACG CCGAAATCGC CCGTGGGTTC ACGGACTTTA ACGACCTTCA CCAATCACGA GGATTGGACG CGGTACGCGA ACAGACCGCT CCCCTGATTC GACAGTATGA AGAGGTAACT GCCATGCCGA CAGATTCGAA TACCCAAGCA CAGGATGTCG CACCTGCCAT GCCGATACCG GATGAAGCGG TGCAGCCGCA GGCCGACCTG GTGCAATCTG GCGACCCAAC ATCAACGGCT GAGAGTGAGG ATAAGCAAGC CAAGACCTTC ATCTTAATGG ATGCAGACAA CGGGATGGTT TGGGACGGTC AGGCGTTCAA GGCCGCAGAC CTCGCTGAGG CTGAGCGCTT TACGCCCATT GATGGCTTGA AGGCGGCACT TGAACTTGAG CACTCCCAAC GGTATGCGCT GGAGGGAGCC GCAATTGAAA TCCACCGCTA TATGCCTGTG CTTGATGAGA GTGTTCGCGT CATCACTACT AACGCGGCAA AAACCTGGCC GGAATTAAAA AGTGCTTTCA AAAAGGCGGG CCTGGAGGTT TCGCAAGAAA CCTACCAGTC AATTCGTGAT GAAGTCGCAG CGAGGCTTGA TCAGTCAAGT ACCCTGCCTG TAGAGCCTGT GACCGAAGTG CCATTGGTCG TCGGCACTGC GGACGTGCCC GTTCAGCAAC CTGCGGCGGT GATTGAGCCT GAGAAAACAC CGCCGACCGC ATTGCCCGAA GCCTTGCCTG TAGATGGGCC GCAGCCTGCA TCAGCGCCTT TGACCGAAAT GTCAGATGAA GCTGCCCAAC CTGCCTCTGC GTCGGTTGAA GCAGCGCCAC CAGTTAAGCA ACAGACGTCG GCCGAGGCCG ATCCTGACGC TTCCGCGATC GTTGACGATC AGCCCAAGGC AACAATGCCT GCGGCGTCCG ACCGCAACAC GTCCTCTGAC GCGCCAGGAC TCAACCGGCC ACCTTTGGCG GCGGCCGAGC CAGAGCAGTC AAACGAGACA GCTCAACCAG CTGCGCCTCC TGCTAAACAA CAGGCGTCAG TAGAGGCTGA TCCTGACACT TCCCCCGTCG CTGAGGATCA ACCGATAATC GCACCGGCAG GGCCTGCTCA AAACGAAGAC AATGAAAGCC TTTCAGACGT GGAGGTTCCG GTGTCAGGGG CCCTGCCGCG TCGTTTCACC ACAGCACGCA AGACCGGCCC GGCGGTCGTA CCGGATGCTA TCTTCGTAGG GGCTCCGATA GGTGCCGACG AGCCACAACT GCAAGCCAGC AACATCGACA AAGACGCTCT GTTGGCCCGC ATCAGCCGTG AGGTTCAAGG TGACAATTCG GTGCTCTACA AGCTCGATGC CGAGCCTGCT TTCGTTGACC GTGGGTCGCG CCTGGAGATG GTCCAAGGCG CAGGTCAGGA AGATGAGAAG GTAATAGCTG CGTTGCTCAC GGCAGCACAG TTCTACCGGG GGCGCATCGA ACTGACCGGC AGTGACGAAT TCAAGGCAAA AGCCATCGAG CTGATTGCTC AGCACCAGAT CAATGTGGAG ATGAAGAACC CTGCGCAGCA AATGTTGCTG GACGATGCCC GTAACGCGTT GAAGCAGCCA CCTGTAACGC TTGATGCCAT TCATGGTGAT ACCCCACCGC CGTATGGTGG TCCACAGCCG TCACAGGCGA AGCCCTCGGC ACCGCAACCT CAACAAGCCG CGCCGGCACC GGTGCATTCG TCTGCGCCCG CGCCGGCGAG TACCGCTTAC CAGCCTCTGG AGGTTGAGGG TCTGCAACGG CGGCCGGCTC AATCTGCCCC ACAGGCACAG GCCCCGCAAG CGGGCGTTGC ACCGCAACCT CAACAAGCCG CGCCGGTACA TTCGTCTGCG CCCGCTTCGG CAAGTACTGC TTATCAGCCG CTGGACGTTG AGGGTCTGCA GCGGCCACTG GTTCAACCTG CACCACCGGC ACAGCCGGAC GCACCGGTCA TCAATCCGCC CTCGGCAGCT CCAGCATCGG ATCAGCCTGC AACGTCAGCG AATCAGCAGG TGTCGCCCGC CATCCATCAG CCTTTCCAGG CGGCCAAGGA TGGCGTGACA GGCAAGATCC TCAAATTTGG CCAGAAGCCG TTTCGTTTTG AGCCAGACAA GCCCGAGAGC ACCTTCATCA CACTGCGTAC CGTGAACGGT GTTCAGACTT TTTGGGGCAA GGAGCTGGCG GGGCTGCTGC GCCAAACCCG TGTGCAGCCA GGCAAGATGG TGACGTTGCA GTGGCTGGGC AATCATCCGG TTACCGTCAA GGTGCCCCGC AAAAACGAGC AGGGCGTCAC CGTGGGTTAC GACGATAAAG ACGTTCATCG CAACCAATGG GCCCTTAAGG TAGAGGGTAA CCCCGCAGTG CGTTCTGGCC AGGATGAGGG CGTCAAACTC GGCGCCTATG ACGCCGGGCG TTTCGCCGTG GTGCAACAAG CCTGGCTTGC GCAACTGGGC GTGGAGGCTC CCTTGCCCAC GCCACCCACG GATGGCCTGT ATTGGTTGAC CCCAAACGGT GAAGGCAGCG CAAAAACGGG TGATGAGCTG TCAGCCCCTC GGCCGCCGAT CGACCCCAAC AACACAGCGG GACAACCCGT CATCAGCAGT TGGTCACGGG ATGGCCATCT GGACATGTAC CTGGTGCGCG GCGATGGTCC CTATCTGCAA GGTGTGGTGC GTCAGGGGGA TCAGATGCAG CATGTATTGG TGAGTCTTCC AGGCCGTGAC GATGGGCCTT CGATGGTGTT TAACGCCATT ACCCCCGAGG GACTGCTGCC GATCGGCACG GGCAATGGCA TCAACCGCTC TGGTGGCGAG CCGGTGTCGA GAGAGCACAT TGCCTTCAAG CTTGAAGGCG ACAGCGCTGT GCGCATTGGC AAGCTTGATG CGCCTGGCGA GGTGCCCCCG ACCTTGCACA ACCTATTGGG CTTCGATCAG CGCTGGAAAG AGGAAAACAC CCTCCCAAAG TCAGCTCCCA CAGCGGCACC GTCAGTACAG CCGAGCGATC CACGTCCGGT GTAA
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Protein sequence | MTLTIDHAKK LVIEFCATYP VASTISYKIR ETQEELYGPQ ATREAAGIIL GSFRPGRGRA EFAISNFRDE DHFRRTLRHE ILGHYGINTF NPAEKRAVLE GVIQSRNDPG MAALWAEVAR IYPQLTDSMK AEEVFAFACE RIVSPIRGNV AEGARSFRET CIERTRAMQV SDLINLTTMV AEGLHDRSRS QQNFPASDNA QFKIETAPRT SEYPVWLAVP PDDRDKARLS AGRLSDGRAA IAWNKEEKLW FARPGCDLDR ITDWLPDPSR RAGGGDAESE FLDVLTQAGL VVKGMPVMNG SRQRVATVDD KHGKKSGVYC GFLDRRPAGW FINYHRADSA KDVTNWAATG GESDPITRLH IRAGAKQAQE DAARDRAVTY AKQTLAAKRL YDRLPAADPA HPYLVRKGIP PTPDIRQTRN GALVVPFFNA SGTFKTLQYI PPEGEKFLFK DAPKQEHFLV VGGPLDPVNP ILYAEGYATA RSLNLATGLP VVMTIDAGNM VAVAKVLHQQ YPDSRHLFMA DFDHAKDVNK GLIMANEAAI AVGGQVMYPT FNDAEIARGF TDFNDLHQSR GLDAVREQTA PLIRQYEEVT AMPTDSNTQA QDVAPAMPIP DEAVQPQADL VQSGDPTSTA ESEDKQAKTF ILMDADNGMV WDGQAFKAAD LAEAERFTPI DGLKAALELE HSQRYALEGA AIEIHRYMPV LDESVRVITT NAAKTWPELK SAFKKAGLEV SQETYQSIRD EVAARLDQSS TLPVEPVTEV PLVVGTADVP VQQPAAVIEP EKTPPTALPE ALPVDGPQPA SAPLTEMSDE AAQPASASVE AAPPVKQQTS AEADPDASAI VDDQPKATMP AASDRNTSSD APGLNRPPLA AAEPEQSNET AQPAAPPAKQ QASVEADPDT SPVAEDQPII APAGPAQNED NESLSDVEVP VSGALPRRFT TARKTGPAVV PDAIFVGAPI GADEPQLQAS NIDKDALLAR ISREVQGDNS VLYKLDAEPA FVDRGSRLEM VQGAGQEDEK VIAALLTAAQ FYRGRIELTG SDEFKAKAIE LIAQHQINVE MKNPAQQMLL DDARNALKQP PVTLDAIHGD TPPPYGGPQP SQAKPSAPQP QQAAPAPVHS SAPAPASTAY QPLEVEGLQR RPAQSAPQAQ APQAGVAPQP QQAAPVHSSA PASASTAYQP LDVEGLQRPL VQPAPPAQPD APVINPPSAA PASDQPATSA NQQVSPAIHQ PFQAAKDGVT GKILKFGQKP FRFEPDKPES TFITLRTVNG VQTFWGKELA GLLRQTRVQP GKMVTLQWLG NHPVTVKVPR KNEQGVTVGY DDKDVHRNQW ALKVEGNPAV RSGQDEGVKL GAYDAGRFAV VQQAWLAQLG VEAPLPTPPT DGLYWLTPNG EGSAKTGDEL SAPRPPIDPN NTAGQPVISS WSRDGHLDMY LVRGDGPYLQ GVVRQGDQMQ HVLVSLPGRD DGPSMVFNAI TPEGLLPIGT GNGINRSGGE PVSREHIAFK LEGDSAVRIG KLDAPGEVPP TLHNLLGFDQ RWKEENTLPK SAPTAAPSVQ PSDPRPV
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