Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_B0010 |
Symbol | |
ID | 1187388 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004632 |
Strand | + |
Start bp | 9517 |
End bp | 10932 |
Gene Length | 1416 bp |
Protein Length | 471 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637408275 |
Product | major facilitator family transporter |
Protein accession | NP_808601 |
Protein GI | 29171555 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGACTGAAT CTGGATATGG AAGGACGAAT GACGCCATGA ATAAGCTCCC GCTGGAAAAC GCGACTCAAG CGGCCAATGC CTGGCGCGTG CTGTTCCTGT TGTTTTTGGC CAACCTGTTC AACTTTTTCG ATCGTACCAT TCCGGCAATC ATCGTTGAGC CCATTCGTCT GGAATGGCAC TTGAGCGACT TCCAGCTGGG CATGCTCGGC ACTGCGTTCA CGCTGGTCTA CGCCATTGCC GGCCTGCCGC TGGGGCGCAT GGCGGATAAC GGTTCGCGTA AAAAGCTGAT GGGCTGCGGG CTGGCGGTCT GGAGCGGCTT GACGGCGGTC AACGGCATGG TCGGCAGTTT CTGGACGTTC CTGCTGGTGC GCATGGGCGT CGGGATAGGC GAGGCCAGTT ATGCGCCTGC GGCCAACTCG CTGATTGGCG ATTTGTTCCC TGCCCACCGG CGCGCACGGG CCATGGGCCT GTTCATGCTG GGTCTGCCGT TGGGCTTGCT GCTGGCGTTC TTTACCATCG GTGCGATGGT AAAGGCGTTC GACAGCTGGC GTGCGCCATT CTTCATTGCG GCGGTGCCCG GTCTGTTGCT GGCCGTGTTG TTTTTTTTCA TCAGGGAGCC CAAGCGCGGC GCTGCCGAAA GCGTGCGCAT GTCGGAAGCT AAGATCGACA AGCCGATCCA CCGGGTGATG TCGATCCCGA CCTTTCGGTG GCTGGTGCTG GCCGGTCTGA CCTTCAACTT TGCGACCTAC GCCTGCAATT CATTCATGGT GCCGATGCTG CAGCGTTACT TCCTTTTGCC GTTGCAGGAA GCTGCGGTTG CGACGGGGGT CATCGTGGGC GTGACCGGAT TGATCGGCCT GACGCTGGGC GGCTGGATTG CCGACAAGCT GCACCAGCGT TCCGCCAATT GGCGGCTACT GTTTGCGACC TTCAGCATGC TGGTCGCCGC GCTGGCGACA GGCTATGCGC TGCATGCAGG ACGAATCGAG ATCGGCGTAT TTGTAGGCGT TTTCAGCCTT GGCTGGCTGT TTGCCTACAA CTTTTACACC TGCGCCTATA CCGCGATACA GGACGTGGTC GAGCCTCGCC TGCGGGCAAC CGCCATGGCA TTGTTCTTTG CCGGGCTCTA TCTGCTGGGC GGCGGGCTTG GGCCGGTGGT GGTCGGCCTG CTCTCTGATC ACTTCGCCTA CTCGGCGATG GCGGTGGCGG GTGTCGATGT CATGAACGAA AGCTTCAAAG CCATCGGCCT GCACGACGCC ATGTACCTGA TCCCGGTCGC GCTGTTTCTG ACCTTGCTGT TTTTGTATCA GGCATCGCGC TGCTTCAGCC GGGATGCAGA GCGGATGACG GCGCGCATGG TGGCTGAAGA GCCAGTGGCA GGGTTGGCGG AACGGGTTGT GGTGACCAAG CAGTAA
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Protein sequence | MTESGYGRTN DAMNKLPLEN ATQAANAWRV LFLLFLANLF NFFDRTIPAI IVEPIRLEWH LSDFQLGMLG TAFTLVYAIA GLPLGRMADN GSRKKLMGCG LAVWSGLTAV NGMVGSFWTF LLVRMGVGIG EASYAPAANS LIGDLFPAHR RARAMGLFML GLPLGLLLAF FTIGAMVKAF DSWRAPFFIA AVPGLLLAVL FFFIREPKRG AAESVRMSEA KIDKPIHRVM SIPTFRWLVL AGLTFNFATY ACNSFMVPML QRYFLLPLQE AAVATGVIVG VTGLIGLTLG GWIADKLHQR SANWRLLFAT FSMLVAALAT GYALHAGRIE IGVFVGVFSL GWLFAYNFYT CAYTAIQDVV EPRLRATAMA LFFAGLYLLG GGLGPVVVGL LSDHFAYSAM AVAGVDVMNE SFKAIGLHDA MYLIPVALFL TLLFLYQASR CFSRDAERMT ARMVAEEPVA GLAERVVVTK Q
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