Gene PSPTO_B0010 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_B0010 
Symbol 
ID1187388 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004632 
Strand
Start bp9517 
End bp10932 
Gene Length1416 bp 
Protein Length471 aa 
Translation table11 
GC content60% 
IMG OID637408275 
Productmajor facilitator family transporter 
Protein accessionNP_808601 
Protein GI29171555 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGACTGAAT CTGGATATGG AAGGACGAAT GACGCCATGA ATAAGCTCCC GCTGGAAAAC 
GCGACTCAAG CGGCCAATGC CTGGCGCGTG CTGTTCCTGT TGTTTTTGGC CAACCTGTTC
AACTTTTTCG ATCGTACCAT TCCGGCAATC ATCGTTGAGC CCATTCGTCT GGAATGGCAC
TTGAGCGACT TCCAGCTGGG CATGCTCGGC ACTGCGTTCA CGCTGGTCTA CGCCATTGCC
GGCCTGCCGC TGGGGCGCAT GGCGGATAAC GGTTCGCGTA AAAAGCTGAT GGGCTGCGGG
CTGGCGGTCT GGAGCGGCTT GACGGCGGTC AACGGCATGG TCGGCAGTTT CTGGACGTTC
CTGCTGGTGC GCATGGGCGT CGGGATAGGC GAGGCCAGTT ATGCGCCTGC GGCCAACTCG
CTGATTGGCG ATTTGTTCCC TGCCCACCGG CGCGCACGGG CCATGGGCCT GTTCATGCTG
GGTCTGCCGT TGGGCTTGCT GCTGGCGTTC TTTACCATCG GTGCGATGGT AAAGGCGTTC
GACAGCTGGC GTGCGCCATT CTTCATTGCG GCGGTGCCCG GTCTGTTGCT GGCCGTGTTG
TTTTTTTTCA TCAGGGAGCC CAAGCGCGGC GCTGCCGAAA GCGTGCGCAT GTCGGAAGCT
AAGATCGACA AGCCGATCCA CCGGGTGATG TCGATCCCGA CCTTTCGGTG GCTGGTGCTG
GCCGGTCTGA CCTTCAACTT TGCGACCTAC GCCTGCAATT CATTCATGGT GCCGATGCTG
CAGCGTTACT TCCTTTTGCC GTTGCAGGAA GCTGCGGTTG CGACGGGGGT CATCGTGGGC
GTGACCGGAT TGATCGGCCT GACGCTGGGC GGCTGGATTG CCGACAAGCT GCACCAGCGT
TCCGCCAATT GGCGGCTACT GTTTGCGACC TTCAGCATGC TGGTCGCCGC GCTGGCGACA
GGCTATGCGC TGCATGCAGG ACGAATCGAG ATCGGCGTAT TTGTAGGCGT TTTCAGCCTT
GGCTGGCTGT TTGCCTACAA CTTTTACACC TGCGCCTATA CCGCGATACA GGACGTGGTC
GAGCCTCGCC TGCGGGCAAC CGCCATGGCA TTGTTCTTTG CCGGGCTCTA TCTGCTGGGC
GGCGGGCTTG GGCCGGTGGT GGTCGGCCTG CTCTCTGATC ACTTCGCCTA CTCGGCGATG
GCGGTGGCGG GTGTCGATGT CATGAACGAA AGCTTCAAAG CCATCGGCCT GCACGACGCC
ATGTACCTGA TCCCGGTCGC GCTGTTTCTG ACCTTGCTGT TTTTGTATCA GGCATCGCGC
TGCTTCAGCC GGGATGCAGA GCGGATGACG GCGCGCATGG TGGCTGAAGA GCCAGTGGCA
GGGTTGGCGG AACGGGTTGT GGTGACCAAG CAGTAA
 
Protein sequence
MTESGYGRTN DAMNKLPLEN ATQAANAWRV LFLLFLANLF NFFDRTIPAI IVEPIRLEWH 
LSDFQLGMLG TAFTLVYAIA GLPLGRMADN GSRKKLMGCG LAVWSGLTAV NGMVGSFWTF
LLVRMGVGIG EASYAPAANS LIGDLFPAHR RARAMGLFML GLPLGLLLAF FTIGAMVKAF
DSWRAPFFIA AVPGLLLAVL FFFIREPKRG AAESVRMSEA KIDKPIHRVM SIPTFRWLVL
AGLTFNFATY ACNSFMVPML QRYFLLPLQE AAVATGVIVG VTGLIGLTLG GWIADKLHQR
SANWRLLFAT FSMLVAALAT GYALHAGRIE IGVFVGVFSL GWLFAYNFYT CAYTAIQDVV
EPRLRATAMA LFFAGLYLLG GGLGPVVVGL LSDHFAYSAM AVAGVDVMNE SFKAIGLHDA
MYLIPVALFL TLLFLYQASR CFSRDAERMT ARMVAEEPVA GLAERVVVTK Q