| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5612 |
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| Symbol | |
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| ID | 1187304 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 6394400 |
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| End bp | 6396088 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637396925 |
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| Product | inner membrane protein, 60 kDa |
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| Protein accession | NP_795330 |
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| Protein GI | 28872711 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0706] Preprotein translocase subunit YidC |
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| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATATTA AACGCACGAT CCTGATCGTT GCCCTGGCAA TCGTGACCTA CGTCGGGGTC
CTGAAATGGA ACCAAGACTA TGGTCAGGCT GCCATGCCAA CCCAGAATGT TGCAGCCAGC
AACACCGCAC CGGGTATTCC GGATACGGCT GCTGGTAATA ATGGTTCTGC AAGTGCCGAC
GTTCCGAGCG CTACTGGCAA TACTACCAGT GCAGCGCCTC TTGAAACTCC GGCCGTAGCC
AGCAAAGACC TCATCCACGT CAAGACCGAC GTGCTTGATC TGGCGATCGA CCCGGTAGGT
GGTGACGTCG TTCAGCTTCG TTTGCCTCTG TACCCGCGTC GTCAGGATCG TCCTGACGTG
CCTTTCCAGC TGTTCGATAA CGGCGGCGAG CGTACTTTTC TCGCACAGAG CGGCCTGACC
GGGACCAATG GTCCTGATGC TCGCGCCTCC GGTCGTCCGG TTTATTCCTC CGCGCAAAAG
AGTTATCAAC TGGCTGATGG CCAGGACTCG ATGGTCGTGG AGCTGAAATT CTCGGAAAAC
GGCGTCAACT ACATCAAGCG CTTCACATTC AAGCGCGGTC TGTACGACCT GGTCATGACT
TACGTTGTGG ATAACCAGAG CGCGCAACCC TGGGCCGGTA ATCTGTTCGC GCAATTGAAG
CGTGATGCCA GCTCCGATCC TTCGTCGACC ACTGCAACCG GCACAGCCAC CTACCTGGGT
GCTGCGCTCT GGACTGCGGC CGAGCCGTAC AAAAAAGTGT CGATGAAAGA TATCGACAAG
GGCCAGATCA AGGAAAACGT TCAGGGCGGC TGGGTTGCAT GGCTGCAGCA CTACTTCGTG
ACGGCGTGGA TTCCTGATCA TAACGTGACC AACGCCGTTC AGACCCGCAA AGACAGCCAA
GGCAACTACA TCATTGGTTT CACCAGCCCG ACACTGTCGG TTGCGCCAGG CGCACAAGGC
GAAACCACTG CCACGTTGTA CGCAGGTCCG AAAAGCCAGG CGGTGCTCAA AGAGTTATCC
CCAGGTCTGG AGCTGACAGT CGATTACGGT TTCCTGTGGT TCATTGCCCA GCCTATCTTC
TGGCTGCTGC AACACATCCA CGCGATTCTG GGCAACTGGG GCTGGTCGAT CATCGTCCTG
ACCATGTTGA TCAAAGGCCT GTTCTTCCCG CTGTCCGCAG CCAGCTACAA GTCGATGGCA
CGCATGCGCG CCGTGGCTCC AAAGCTTGCA GTGCTGAAGG AACAACATGG CGATGATCGT
CAGAAGATGT CCCAAGCAAT GATGGAGCTG TACAAGAAAG AGAAGATCAA CCCACTGGGT
GGATGCTTGC CGATTCTTGT ACAAATGCCG GTTTTCCTCT CGCTGTACTG GGTACTCCTG
GAAAGCGTGG AAATGCGTCA GGCGCCGTGG ATCCTGTGGA TAACTGATCT GTCGATCAAA
GACCCGTTCT TTATCCTGCC GATCATCATG GGCGCGACCA TGTTCATCCA GCAGCGTTTG
AACCCTACTC CGCCGGACCC GATGCAGGCC AAGGTCATGA AAATGATGCC GATCATTTTC
ACGTTCTTCT TCCTGTGGTT CCCTGCCGGT CTGGTTCTGT ACTGGGTTGT GAACAACACC
CTGTCGATCG CACAGCAGGC GTACATCACT CGCAAGATCG GAGCAGCTAC CAAGAAAGCA
GCTGCCTGA
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| Protein sequence | MDIKRTILIV ALAIVTYVGV LKWNQDYGQA AMPTQNVAAS NTAPGIPDTA AGNNGSASAD
VPSATGNTTS AAPLETPAVA SKDLIHVKTD VLDLAIDPVG GDVVQLRLPL YPRRQDRPDV
PFQLFDNGGE RTFLAQSGLT GTNGPDARAS GRPVYSSAQK SYQLADGQDS MVVELKFSEN
GVNYIKRFTF KRGLYDLVMT YVVDNQSAQP WAGNLFAQLK RDASSDPSST TATGTATYLG
AALWTAAEPY KKVSMKDIDK GQIKENVQGG WVAWLQHYFV TAWIPDHNVT NAVQTRKDSQ
GNYIIGFTSP TLSVAPGAQG ETTATLYAGP KSQAVLKELS PGLELTVDYG FLWFIAQPIF
WLLQHIHAIL GNWGWSIIVL TMLIKGLFFP LSAASYKSMA RMRAVAPKLA VLKEQHGDDR
QKMSQAMMEL YKKEKINPLG GCLPILVQMP VFLSLYWVLL ESVEMRQAPW ILWITDLSIK
DPFFILPIIM GATMFIQQRL NPTPPDPMQA KVMKMMPIIF TFFFLWFPAG LVLYWVVNNT
LSIAQQAYIT RKIGAATKKA AA
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