| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5611 |
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| Symbol | trmE |
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| ID | 1187303 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 6392951 |
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| End bp | 6394321 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637396924 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | NP_795329 |
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| Protein GI | 28872710 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGTTC CTCGTGAAAC CATCGCCGCC ATCGCTACCG CCCAGGGGCG CGGTGGTGTC
GGTATTGTCC GTGTGTCGGG GCCTTTGGCC GGCAAAACCG CGCAAGCCAT TACCGGTCGA
ATGCCCAAGC CACGATTCGC GCACTACGGC CCTTTTGCCG ACGAGTCGGG GCAGGTGCTC
GATGAAGGCA TTGCGTTGTA TTTCCCCGGG CCAAACTCGT TCACCGGCGA GGACGTGCTG
GAGCTTCAGG GTCATGGTGG GCCCATCGTT CTGGATATGC TGCTGCAACG CTGCCTGCAA
CTGGGCAGCC GCCTGGCGCG TCCGGGTGAA TTCAGCGAAC GTGCGTTCCT CAATGACAAG
CTCGATCTTG CCCAGGCCGA GGCCATTGCT GACCTGATCG AGGCGAGTTC TGCACAGGCA
GCGCGCAATG CGCTGCGCTC GTTGCAGGGT GTTTTTTCGC AGCGTGTGGA TAACTTGACC
GAGAAATTGA TCAGCCTGCG TATCTACGTC GAAGCCGCCA TCGACTTTCC AGAGGAAGAA
ATCGACTTTC TCGCCGACGG CCATGTGCTG GGTATGCTCG ACGATGTGCG TGCCGAGTTA
TCCACAGTGC TGCGTGAGGC AGGACAGGGT GCGTTGCTGC GTGACGGCAT GACGGTGGTG
ATCGCCGGTC GTCCCAATGC GGGCAAGTCC AGCTTGCTGA ACGCTCTGGC GGGCAGAGAA
GCGGCCATCG TTACCGAGAT TGCCGGCACG ACTCGCGATG TATTGCGTGA ACATATCCAC
ATAGACGGAA TGCCCTTGCA CGTCGTGGAC ACTGCTGGTT TGCGCGACAC TCAGGACCAG
GTTGAAATGA TCGGCGTGCA GCGTGCACTC AAGGCTATAG GTGAAGCTGA CCGGATCCTG
CTGGTGGTGG ACGCAACCGC CCCGGAAGCT GCAGATCCGT TCGCCTTGTG GCCGGAATTC
CTGGAGCAGC GTCCGGACCC TGCGAAGGTC ACTCTGATCC GTAACAAGGC TGATTTGAGT
GGCGACAGCA TTGCCCTGCA AACAAGCGCC GATGGCCATG TCACGATCAG CCTCAGCGCC
AGGTCAGGAG GAGAGGGGCT TGAGCTGCTG CGTGAGCATC TGAAGGCCTG CATGGGCTAT
GAGCAGACAT CGGAAAGCAG CTTTAGCGCG CGTCGGCGCC ACCTTGAGGC GCTGCGCCAC
GCCAGTGACT CGCTGGAGCA CGGCAGGGCG CAATTGACCC TGGCTGGCGC TGGAGAGCTG
TTGGCCGAAG ACCTGCGTCA GGCGCAACAG GCGCTTGGCG AGATTACCGG GGCATTCAGT
TCCGATGACC TGCTCGGCAG AATCTTTTCC AGCTTCTGTA TCGGCAAATA A
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| Protein sequence | MNVPRETIAA IATAQGRGGV GIVRVSGPLA GKTAQAITGR MPKPRFAHYG PFADESGQVL
DEGIALYFPG PNSFTGEDVL ELQGHGGPIV LDMLLQRCLQ LGSRLARPGE FSERAFLNDK
LDLAQAEAIA DLIEASSAQA ARNALRSLQG VFSQRVDNLT EKLISLRIYV EAAIDFPEEE
IDFLADGHVL GMLDDVRAEL STVLREAGQG ALLRDGMTVV IAGRPNAGKS SLLNALAGRE
AAIVTEIAGT TRDVLREHIH IDGMPLHVVD TAGLRDTQDQ VEMIGVQRAL KAIGEADRIL
LVVDATAPEA ADPFALWPEF LEQRPDPAKV TLIRNKADLS GDSIALQTSA DGHVTISLSA
RSGGEGLELL REHLKACMGY EQTSESSFSA RRRHLEALRH ASDSLEHGRA QLTLAGAGEL
LAEDLRQAQQ ALGEITGAFS SDDLLGRIFS SFCIGK
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