| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5601 |
|---|
| Symbol | atpA |
|---|
| ID | 1187293 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 6383667 |
|---|
| End bp | 6385211 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637396914 |
|---|
| Product | ATP synthase F1, alpha subunit |
|---|
| Protein accession | NP_795319 |
|---|
| Protein GI | 28872700 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0056] F0F1-type ATP synthase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00962] proton translocating ATP synthase, F1 alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCAAC TCAATCCTTC CGAAATAAGT GAAATCATCA AGGGTCGCAT CGACAAGCTC
GATGTAACCT CCCAAGCCCG TAACGAAGGC ACAGTCGTCA GCGTGTCTGA CGGTATCGTG
CGGATTCACG GTCTGGCCGA CGTAATGTAC GGCGAGATGA TCGAGTTTCC GGGCGGCGTC
TACGGTATGG CGCTGAACCT TGAGCAAGAC TCCGTAGGTG CCGTTGTACT GGGCGCTTAC
ACGACTCTGG CTGAAGGCAT GAGCGCCAAG TGCACTGGCC GCATCCTCGA GGTTCCGGTG
GGTAAGGAAC TGCTGGGTCG CGTTGTCGAT GCACTGGGTA ACCCGGTTGA CGGCAAAGGT
CCGCTGAACA ACACCGAGAC CGATGCGGTC GAGAAAGTTG CTCCAGGCGT GATCTGGCGT
AAGTCGGTAG ACCAGCCTGT ACAGACTGGC TACAAGGCTG TCGATGCCAT GATTCCTGTC
GGCCGTGGCC AGCGTGAGCT GATCATCGGT GACCGTCAGA TCGGTAAAAC CGCTCTGGCC
ATCGACGCAA TCATCAACCA GAAGAACAGC GGCATCTTCT GCGTCTACGT AGCAATAGGT
CAGAAGCAAT CGACCATCGC CAACGTTGTT CGCAAGCTCG AAGAAAACGG CGCACTGGCT
AACACCATCG TCGTGGCTGC AAGTGCTTCC GAATCCGCTG CGCTGCAATT CCTTGCACCG
TACTCGGGTT GCACCATGGG TGAATTCTTC CGCGACCGCG GTGAAGACGC GCTGATCGTT
TATGACGATC TGTCCAAGCA AGCAGTGGCT TACCGCCAGA TTTCCCTGCT GCTGCGCCGT
CCACCAGGCC GTGAAGCTTA CCCAGGCGAC GTGTTCTATC TCCACTCCCG TCTGCTGGAG
CGCGCATCGC GTGTTTCCGA AGAGTACGTA GAGAAGTTCA CCAACGGCGC AGTGACCGGC
AAAACAGGCT CCCTGACCGC GCTGCCGATC ATCGAAACCC AGGCTGGCGA CGTTTCCGCG
TTCGTTCCGA CCAACGTGAT TTCCATCACC GACGGTCAGA TCTTCCTGGA ATCGGCCATG
TTCAACTCCG GCATCCGTCC GGCTGTGAAC GCCGGTGTTT CGGTATCCCG TGTGGGTGGT
GCCGCTCAGA CCAAGATCAT CAAGAAGCTT TCCGGTGGTA TCCGTACTGC TCTGGCTCAG
TACCGTGAAC TGGCGGCATT CGCCCAGTTC GCTTCTGACC TGGACGAGGC GACCCGCAAG
CAACTTGAGC ATGGTCAGCG CGTTACCGAG CTGATGAAGC AGAAGCAATA CGCACCAATG
TCGATCGCTG ACATGGCGCT GTCGCTGTAT GCCGCTGAGC GTGGGTTCCT GACTGACGTC
GAAATCGCCA AGATCGGCAG CTTTGAACAA GCGCTGATTG CTTACTTCAA CCGCGATCAC
GCCGATTTGA TGGCCAAGAT CAACGTTAAG GGTGACTTCA ATGACGAAAT CGACGCTGGC
ATGAAAGCCG GTATCGAGAA GTTCAAGGCC ACCCAAACCT GGTAA
|
|---|
| Protein sequence | MQQLNPSEIS EIIKGRIDKL DVTSQARNEG TVVSVSDGIV RIHGLADVMY GEMIEFPGGV
YGMALNLEQD SVGAVVLGAY TTLAEGMSAK CTGRILEVPV GKELLGRVVD ALGNPVDGKG
PLNNTETDAV EKVAPGVIWR KSVDQPVQTG YKAVDAMIPV GRGQRELIIG DRQIGKTALA
IDAIINQKNS GIFCVYVAIG QKQSTIANVV RKLEENGALA NTIVVAASAS ESAALQFLAP
YSGCTMGEFF RDRGEDALIV YDDLSKQAVA YRQISLLLRR PPGREAYPGD VFYLHSRLLE
RASRVSEEYV EKFTNGAVTG KTGSLTALPI IETQAGDVSA FVPTNVISIT DGQIFLESAM
FNSGIRPAVN AGVSVSRVGG AAQTKIIKKL SGGIRTALAQ YRELAAFAQF ASDLDEATRK
QLEHGQRVTE LMKQKQYAPM SIADMALSLY AAERGFLTDV EIAKIGSFEQ ALIAYFNRDH
ADLMAKINVK GDFNDEIDAG MKAGIEKFKA TQTW
|
|---|
| |