Gene PSPTO_5598 details

Gene Information

• Locus tag: PSPTO_5598
• Symbol: atpC
• ID: 1187290
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 6380879
• End bp: 6381298
• Gene Length: 420 bp
• Protein Length: 139 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 637396911
• Product: ATP synthase F1, epsilon subunit
• Protein accession: NP_795316
• Protein GI: 28872697
• COG category: [C] Energy production and conversion
• COG ID: [COG0355] F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit)
• TIGRFAM ID: [TIGR01216] ATP synthase, F1 epsilon subunit (delta in mitochondria)

Plasmid Coverage information

• Num covering plasmid clones: 31
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACAGTCC ATTGCGACAT CGTCAGCGCG GAAGGGGAAA TCTTCTCCGG TCTGGTCGAG 
ATGGTGATTG CGCACGGCAA CCTGGGTGAT ATCGGTATCG CTCCAGGCCA CGCGCCGCTG 
ATCACTGATC TGAAGCCGGG CCCGATCCGC TTGATCAAGC AGGGTGGGGA AGCGGAGGTG 
TTCTACATCT CCGGTGGTTT CCTTGAGGTT CAGCCGAACA TGGTCAAGGT GCTTGCCGAC 
ACTGTGCAAC GTGCTGCCGA CCTGGACGAA GCTTCTGCTC AGGCCGCTGT CAAGGCTGCC 
GAGAAAGCCC TGAACGAAAA AGGCGCGGAT TTCGATTACG GATCTGCAAC TGCTCGTCTG 
GCCGAGGCTG CAGCTCAGCT GCGCACCGTT CAGCAAATTC GCAAGAAGTT TGGCGGCTAA 

 

Protein sequence

MTVHCDIVSA EGEIFSGLVE MVIAHGNLGD IGIAPGHAPL ITDLKPGPIR LIKQGGEAEV 
FYISGGFLEV QPNMVKVLAD TVQRAADLDE ASAQAAVKAA EKALNEKGAD FDYGSATARL 
AEAAAQLRTV QQIRKKFGG