| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5558 |
|---|
| Symbol | |
|---|
| ID | 1187250 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 6332275 |
|---|
| End bp | 6333726 |
|---|
| Gene Length | 1452 bp |
|---|
| Protein Length | 483 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637396877 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_795282 |
|---|
| Protein GI | 28872663 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.651155 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGTCTC TTCAAGTGAT GGCCGGCAAT GCCGTCGTCA AAACCGTTGT TGAAGAAGCA
TGTGCAAAAG TCATCTACCA ATCATGGATG AATGAGCGCG CTCCAGAACA TCAACACGAT
GCGGTCATGT TTCTGAACCA CTGTCTGGCC CGGGCGGAGC GGGAAAACTG TGATCTTCCG
GCCCAGCCCG AGACGCTTGA ACAGTGGATG GAACAGAACG TAGGTGTTGT AGCCGATCAA
TACGCGCAGT ATCTGGAACA ACGCCGCGCC GGGCAGCCAC GACGATTTTT CAAAAGCAAA
GCTCAGGCAA TGTATTTCAT CCAGCAGGTG GCACCGGCCA AACTGGTCGA CGGTGCCTGG
CTGTATGGTC TGTTGCCACA TTGGGCGGAC TACCGCTTTC ATGGCCTGAT TCGTACCTAT
CTGGAAGAGT TGGGCGACGG TGAACAAGCG CAGAACCACG TGTCGCTGTA TCGCAAACTG
CTCGCCGACC TGGACTGCGA CACCAGCGCC CCGCTGCCCG ATGAAGCCTA TCTGCAAGGT
GCCATTCAGC TGTCACTGGG CCAGTTGAGC GAGCAATATC TGCCCGAAGT CATCGGTTAC
AACCTGGGCT ACGAGCAACT GCCGCTGCAC TTGCTCATTA CCTCGTTCGA GCTGAACGAA
CTGGGCATCG ACCCCTATTA TTTCACCCTG CACGTGACCA TCGATAACGC CAGCACCGGC
CATGCCCGCA AGGCTGCGCA AAGCGTCATC GAGTTGCTGC CTGTGGGGCA GGAACGCAAC
GAGTTTTATC GCCGGGTCGC CAGTGGTTAC CGACTGAACG AGCTGGGCAT GGGTTCTACC
GCCGTGATCC AGTCGTTCGA TCTGGAGCAG GAAGTGGTCG CGATGCTCGA GCGCAAGCGC
ACGTTCGGTC AGCATATGCA TTCCGACTAT TGCCGTCTGG ATGGCAAGAC CGTCAACGAG
TGGCTCGCGC AACCCGACCA GATCCCGGAG TTTCTCGACG TGCTGCAAAG CAGGGGCTGG
ATCAAGCGTC ATGAAGACCC CATTCACAGT CGCTTCTGGA AACTGTTCGA GGGCGTCGGC
GCGCCGATGT TCGGGGTGTT CAACGGCTAT GAGAAGCAAC TGATGCACGA CTGGATAGCG
GGTGACTGGC TGTCGGACGG TAGCGCGCCA CCGACGGTTG GCAAGCGACT GCCCGAAGCG
TTTCGCTCGC GCTTTCGCAA TCTGCAAAAC GCTGGTCAGC CTTCTTTAAC TGCTGGCGCA
CCCACGGCCA CAGACGCCGA CCCGGACGTA CGCGAGCTGC ACATGAAACT TGAATCGGCG
GCCGCGTCCG AGAAGATGCC CACGCTGATC GAGAGCATGT CGCCCGCCAG GCACGCGACG
GCAGCGGGAT TGTGCGCCAC ACGCCTGTTT GTCAGCAGCA TGGCCGAGCG AGTGACAGGG
GTTCCTGCAT GA
|
|---|
| Protein sequence | MTSLQVMAGN AVVKTVVEEA CAKVIYQSWM NERAPEHQHD AVMFLNHCLA RAERENCDLP
AQPETLEQWM EQNVGVVADQ YAQYLEQRRA GQPRRFFKSK AQAMYFIQQV APAKLVDGAW
LYGLLPHWAD YRFHGLIRTY LEELGDGEQA QNHVSLYRKL LADLDCDTSA PLPDEAYLQG
AIQLSLGQLS EQYLPEVIGY NLGYEQLPLH LLITSFELNE LGIDPYYFTL HVTIDNASTG
HARKAAQSVI ELLPVGQERN EFYRRVASGY RLNELGMGST AVIQSFDLEQ EVVAMLERKR
TFGQHMHSDY CRLDGKTVNE WLAQPDQIPE FLDVLQSRGW IKRHEDPIHS RFWKLFEGVG
APMFGVFNGY EKQLMHDWIA GDWLSDGSAP PTVGKRLPEA FRSRFRNLQN AGQPSLTAGA
PTATDADPDV RELHMKLESA AASEKMPTLI ESMSPARHAT AAGLCATRLF VSSMAERVTG
VPA
|
|---|
| |