Gene PSPTO_5516 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_5516 
SymboluvrD 
ID1187208 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp6282042 
End bp6284225 
Gene Length2184 bp 
Protein Length727 aa 
Translation table11 
GC content61% 
IMG OID637396835 
ProductDNA helicase II 
Protein accessionNP_795240 
Protein GI28872621 
COG category[L] Replication, recombination and repair 
COG ID[COG0210] Superfamily I DNA and RNA helicases 
TIGRFAM ID[TIGR01075] DNA helicase II 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCGATG ATCTCTCTGT TCTTCTTAAT TCCCTCAACG ATGCCCAACG TCAGGCCGTA 
GCCGCCTCAT TGGGTCGTCA GTTGGTCCTG GCCGGTGCTG GCTCCGGCAA AACCCGAGTG
CTGGTGCATC GCATCGCCTG GCTGATGCAG GTCGAGCAAG CCTCCCCGCA TTCGGTCCTG
TCGGTGACGT TCACCAACAA GGCAGCTGCC GAGATGCGCC ACCGCATCGA GCAGCTCATG
GGCATCAGCC CTGCTGGCAT GTGGGTAGGC ACTTTCCACG GCCTGGCGCA CCGCCTGTTG
CGGGCGCACT GGCAGGAAGC CGGGCTGGTG CAGACCTTCC AGATTCTCGA CAGCGATGAC
CAGCAACGTC TGGTCAAGCG CGTGATGCGC GAGCTGGGTC TGGACGAGCA ACTCTGGCCT
GCGCGTCAGG CTCAGTGGTT CATCAATGGT CAGAAAGACG AAGGCCTGCG CCCGAAACAT
ATTCAGGCCA GCGGCGATCT GTTCCTGACC ACCATGAAAA GCGTTTACGA AGCCTACGAG
GCTGCCTGCC AGCGTGCAGG CGTCATCGAC TTCTCTGAGT TGCTGCTGCG CGCGCTGGAC
CTGTGGCGTG ACAACCCTGG CTTGCTGGCG CACTACCAGC GCCGCTTCCG CCACGTACTG
GTGGACGAGT TTCAAGATAC CAACGCCGTG CAATATGCCT GGCTGCGCCT GCTTGCTCAG
GGTGGCGACA GCCTGATGGT GGTCGGCGAC GACGATCAGT CCATCTACGG CTGGCGTGGC
GCGAAGATCG AGAACATCCA TCAGTATTCC GATGATTTCC CGGACACCGA AGTGATCCGC
CTGGAGCAGA ACTACCGCTC CACGGCGAGC ATCCTCAAAG CCGCCAACGG TTTGATCATC
AATAACAGCG GGCGTCTGGG CAAAGAGTTG TGGACCGACG TCGGCGATGG CGAGCTGATC
AATCTGTATG CCGCCTTCAA CGAACACGAC GAAGCGCGTT ACGTGGTCGA GACCATCGAG
AGCGCCCTGA AAACCGGCAT CTCACGCAAC GACATCGCCA TTCTGTACCG TTCCAACGCC
CAGTCTAGGG TGCTGGAAGA AGCCCTGCTG CGCGAGCGTA TTCCGTACCG CATCTATGGC
GGGCAGCGCT TTTTCGAGCG CGCCGAGATC AAGAACGCGA TGGCCTATAT GCGCCTGCTG
GAAGGTCGCG GCAACGATGC CGCGCTGGAG CGGGTGATCA ACGTTCCGGC ACGCGGCATC
GGCGAGAAAA CCGTCGAAGC GATTCGCGAG CACGCGCGGC ATGCCGACGT GTCGATGTGG
GAAGCCATGC GCCTGCTGGT CGCCAACAAG GGCCTGACTG GCCGCGCTGC CGGCGCGCTG
GGCGGGTTTA TCGAGCTGAT CGAGAACCTG TCGGCCAAGG TCATGGAAAT GCCGCTGCAC
CTGATGACTC AGACAGTCAT CGAGCAGTCC GGGCTGATTA CCTATCACGA ACAGGAAAAA
GGCGAGAAAG GCCAGGCCCG GGTAGAAAAC CTTGAGGAAC TGGTCAGCGC CGCTCGGGCT
TTCGAAAATC ACGAGAGCGA CGAAGAATTG ACCCCGCTGG CCGCCTTCCT CGGCCATGCT
TCGCTGGAAG CTGGCGACAC TCAGGCGCAA GAGCATGAAG ACAGCATTCA GTTGATGACG
TTGCACAGCG CCAAGGGCCT GGAATTCCCG CATGTGTTTC TGGTGGGCAT GGAAGAAGGT
CTGTTCCCGC ACAAGATGAG CCTGGAAGAA CCGGGCCGTC TTGAAGAAGA GCGGCGTCTG
GCCTATGTCG GCATCACCCG TGCCATGAAA CAGCTGGTGA TGACCTACGC CGAGACACGC
CGCCTGTACG GCAGCGAAAC CTACAACAAG GTTTCGCGTT TCGTCCGCGA GATTCCGCCT
GCGCTGATTC AGGAAGTCCG TTTGTCCAAC AGCGTGAGCC GTCCTTTCGG CGGCACTCCG
AAGTTCAACA GCGGCAGCTT GTTCAACGGC ACCGGCATTC CGGAAACCGA GTTCGCCATG
GGCCAGCGCG TGCAGCATGC GGTGTTCGGC GAAGGCGTGA TCCTCAACTT CGAAGGCGCT
GGCGCCCAGG CACGCGTGCA GGTCAACTTC GCCGAAGGCA GCAAGTGGCT GATGATGGGC
TATGCGAAGC TGGTGGCGTT GTAG
 
Protein sequence
MRDDLSVLLN SLNDAQRQAV AASLGRQLVL AGAGSGKTRV LVHRIAWLMQ VEQASPHSVL 
SVTFTNKAAA EMRHRIEQLM GISPAGMWVG TFHGLAHRLL RAHWQEAGLV QTFQILDSDD
QQRLVKRVMR ELGLDEQLWP ARQAQWFING QKDEGLRPKH IQASGDLFLT TMKSVYEAYE
AACQRAGVID FSELLLRALD LWRDNPGLLA HYQRRFRHVL VDEFQDTNAV QYAWLRLLAQ
GGDSLMVVGD DDQSIYGWRG AKIENIHQYS DDFPDTEVIR LEQNYRSTAS ILKAANGLII
NNSGRLGKEL WTDVGDGELI NLYAAFNEHD EARYVVETIE SALKTGISRN DIAILYRSNA
QSRVLEEALL RERIPYRIYG GQRFFERAEI KNAMAYMRLL EGRGNDAALE RVINVPARGI
GEKTVEAIRE HARHADVSMW EAMRLLVANK GLTGRAAGAL GGFIELIENL SAKVMEMPLH
LMTQTVIEQS GLITYHEQEK GEKGQARVEN LEELVSAARA FENHESDEEL TPLAAFLGHA
SLEAGDTQAQ EHEDSIQLMT LHSAKGLEFP HVFLVGMEEG LFPHKMSLEE PGRLEEERRL
AYVGITRAMK QLVMTYAETR RLYGSETYNK VSRFVREIPP ALIQEVRLSN SVSRPFGGTP
KFNSGSLFNG TGIPETEFAM GQRVQHAVFG EGVILNFEGA GAQARVQVNF AEGSKWLMMG
YAKLVAL