| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5516 |
|---|
| Symbol | uvrD |
|---|
| ID | 1187208 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 6282042 |
|---|
| End bp | 6284225 |
|---|
| Gene Length | 2184 bp |
|---|
| Protein Length | 727 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637396835 |
|---|
| Product | DNA helicase II |
|---|
| Protein accession | NP_795240 |
|---|
| Protein GI | 28872621 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | [TIGR01075] DNA helicase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGATG ATCTCTCTGT TCTTCTTAAT TCCCTCAACG ATGCCCAACG TCAGGCCGTA
GCCGCCTCAT TGGGTCGTCA GTTGGTCCTG GCCGGTGCTG GCTCCGGCAA AACCCGAGTG
CTGGTGCATC GCATCGCCTG GCTGATGCAG GTCGAGCAAG CCTCCCCGCA TTCGGTCCTG
TCGGTGACGT TCACCAACAA GGCAGCTGCC GAGATGCGCC ACCGCATCGA GCAGCTCATG
GGCATCAGCC CTGCTGGCAT GTGGGTAGGC ACTTTCCACG GCCTGGCGCA CCGCCTGTTG
CGGGCGCACT GGCAGGAAGC CGGGCTGGTG CAGACCTTCC AGATTCTCGA CAGCGATGAC
CAGCAACGTC TGGTCAAGCG CGTGATGCGC GAGCTGGGTC TGGACGAGCA ACTCTGGCCT
GCGCGTCAGG CTCAGTGGTT CATCAATGGT CAGAAAGACG AAGGCCTGCG CCCGAAACAT
ATTCAGGCCA GCGGCGATCT GTTCCTGACC ACCATGAAAA GCGTTTACGA AGCCTACGAG
GCTGCCTGCC AGCGTGCAGG CGTCATCGAC TTCTCTGAGT TGCTGCTGCG CGCGCTGGAC
CTGTGGCGTG ACAACCCTGG CTTGCTGGCG CACTACCAGC GCCGCTTCCG CCACGTACTG
GTGGACGAGT TTCAAGATAC CAACGCCGTG CAATATGCCT GGCTGCGCCT GCTTGCTCAG
GGTGGCGACA GCCTGATGGT GGTCGGCGAC GACGATCAGT CCATCTACGG CTGGCGTGGC
GCGAAGATCG AGAACATCCA TCAGTATTCC GATGATTTCC CGGACACCGA AGTGATCCGC
CTGGAGCAGA ACTACCGCTC CACGGCGAGC ATCCTCAAAG CCGCCAACGG TTTGATCATC
AATAACAGCG GGCGTCTGGG CAAAGAGTTG TGGACCGACG TCGGCGATGG CGAGCTGATC
AATCTGTATG CCGCCTTCAA CGAACACGAC GAAGCGCGTT ACGTGGTCGA GACCATCGAG
AGCGCCCTGA AAACCGGCAT CTCACGCAAC GACATCGCCA TTCTGTACCG TTCCAACGCC
CAGTCTAGGG TGCTGGAAGA AGCCCTGCTG CGCGAGCGTA TTCCGTACCG CATCTATGGC
GGGCAGCGCT TTTTCGAGCG CGCCGAGATC AAGAACGCGA TGGCCTATAT GCGCCTGCTG
GAAGGTCGCG GCAACGATGC CGCGCTGGAG CGGGTGATCA ACGTTCCGGC ACGCGGCATC
GGCGAGAAAA CCGTCGAAGC GATTCGCGAG CACGCGCGGC ATGCCGACGT GTCGATGTGG
GAAGCCATGC GCCTGCTGGT CGCCAACAAG GGCCTGACTG GCCGCGCTGC CGGCGCGCTG
GGCGGGTTTA TCGAGCTGAT CGAGAACCTG TCGGCCAAGG TCATGGAAAT GCCGCTGCAC
CTGATGACTC AGACAGTCAT CGAGCAGTCC GGGCTGATTA CCTATCACGA ACAGGAAAAA
GGCGAGAAAG GCCAGGCCCG GGTAGAAAAC CTTGAGGAAC TGGTCAGCGC CGCTCGGGCT
TTCGAAAATC ACGAGAGCGA CGAAGAATTG ACCCCGCTGG CCGCCTTCCT CGGCCATGCT
TCGCTGGAAG CTGGCGACAC TCAGGCGCAA GAGCATGAAG ACAGCATTCA GTTGATGACG
TTGCACAGCG CCAAGGGCCT GGAATTCCCG CATGTGTTTC TGGTGGGCAT GGAAGAAGGT
CTGTTCCCGC ACAAGATGAG CCTGGAAGAA CCGGGCCGTC TTGAAGAAGA GCGGCGTCTG
GCCTATGTCG GCATCACCCG TGCCATGAAA CAGCTGGTGA TGACCTACGC CGAGACACGC
CGCCTGTACG GCAGCGAAAC CTACAACAAG GTTTCGCGTT TCGTCCGCGA GATTCCGCCT
GCGCTGATTC AGGAAGTCCG TTTGTCCAAC AGCGTGAGCC GTCCTTTCGG CGGCACTCCG
AAGTTCAACA GCGGCAGCTT GTTCAACGGC ACCGGCATTC CGGAAACCGA GTTCGCCATG
GGCCAGCGCG TGCAGCATGC GGTGTTCGGC GAAGGCGTGA TCCTCAACTT CGAAGGCGCT
GGCGCCCAGG CACGCGTGCA GGTCAACTTC GCCGAAGGCA GCAAGTGGCT GATGATGGGC
TATGCGAAGC TGGTGGCGTT GTAG
|
|---|
| Protein sequence | MRDDLSVLLN SLNDAQRQAV AASLGRQLVL AGAGSGKTRV LVHRIAWLMQ VEQASPHSVL
SVTFTNKAAA EMRHRIEQLM GISPAGMWVG TFHGLAHRLL RAHWQEAGLV QTFQILDSDD
QQRLVKRVMR ELGLDEQLWP ARQAQWFING QKDEGLRPKH IQASGDLFLT TMKSVYEAYE
AACQRAGVID FSELLLRALD LWRDNPGLLA HYQRRFRHVL VDEFQDTNAV QYAWLRLLAQ
GGDSLMVVGD DDQSIYGWRG AKIENIHQYS DDFPDTEVIR LEQNYRSTAS ILKAANGLII
NNSGRLGKEL WTDVGDGELI NLYAAFNEHD EARYVVETIE SALKTGISRN DIAILYRSNA
QSRVLEEALL RERIPYRIYG GQRFFERAEI KNAMAYMRLL EGRGNDAALE RVINVPARGI
GEKTVEAIRE HARHADVSMW EAMRLLVANK GLTGRAAGAL GGFIELIENL SAKVMEMPLH
LMTQTVIEQS GLITYHEQEK GEKGQARVEN LEELVSAARA FENHESDEEL TPLAAFLGHA
SLEAGDTQAQ EHEDSIQLMT LHSAKGLEFP HVFLVGMEEG LFPHKMSLEE PGRLEEERRL
AYVGITRAMK QLVMTYAETR RLYGSETYNK VSRFVREIPP ALIQEVRLSN SVSRPFGGTP
KFNSGSLFNG TGIPETEFAM GQRVQHAVFG EGVILNFEGA GAQARVQVNF AEGSKWLMMG
YAKLVAL
|
|---|
| |