Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5500 |
Symbol | |
ID | 1187192 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 6265312 |
End bp | 6266763 |
Gene Length | 1452 bp |
Protein Length | 483 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637396819 |
Product | sodium/alanine transporter |
Protein accession | NP_795224 |
Protein GI | 28872605 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1115] Na+/alanine symporter |
TIGRFAM ID | [TIGR00835] amino acid carrier protein |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTGGAAA TGATTAACGA CTTTCTCTCC GGTAAGGTAC TGATCGTACT TATCGTTGGC CTGGGTAGTT ACTTCACGAT CCGCTCGCGT TTCGTCCAGT TTCGACACTT TTTCCACATG TTCTCGGTTT TCCGCGACAG TCTGCGCAGC AGCGCCGGCC AGCTGAGTTC GTTTCAGGCC CTGATGCTCA GCCTTGCTGG CCGCGTCGGT GCAGGCAACA TTGCAGGCGT CGGCATTGCC GTGACGCTGG GTGGTCCGGG TGCCGTGTTC TGGATGTGGG TCACCGCACT GGTCGGCATG TCCAGCAGCT TCATCGAGTG TTCGCTCGCG CAGCTCTACA AGCGCAAGGA CTCCGAAGGC CAGTTCCGCG GCGGTCCGGC GTATTACATC CAGCACGGTC TGGGCAAACG CTGGCTGGGT ATGGTCATGG CCGTACTGCT GCTGGTGACC TTCGGCTTTG CCTTCAACGG CCTGCAATCC CACGCCGTGA CCGACTCGCT GAAAAGCGCG TTCAACGTCG ACACCAAAAC CACCGGCATC TGCCTGGTTG TGTTGCTGGG TCTGGCGTTC GTCGGCGGCA TCAAGCGCAT CGCGGCAATT TCCGACCTGC TGGTCCCGGT CAAGACCCTG ATCTACATCG CGGTCACCAT CTACGTCATC GTTCTGCAGA TCGACCACGT GCCCGGCATG CTGATGACCA TCGTCAGAAG CGCCTTCGGC CTTGACCCGG TATTCGGTGG CCTGATCGGC AGCGCGATCG TGATGGGCGT CAAGCGTGGT GTGTTTGCCA ACGAAGCCGG TCTGGGCAGT GCGCCCAACG TGGCGGCTGT AGCGCATGTA GAACACCCGG TGGCACAGGG CGTGGTTCAG GCGTTCAGCG TGTTCCTCGA CACCTTCGTC ATCTGCACCT GCACCGCCTT GCTGATCCTG CTGTCGGGTA TCTACGACAT CGGTTACGAC GGCAACGGTA TCGTGCTGGC GCAAAACTCG CTGGCCGCCG TGGTCGGCGA CTGGGGCCGG ATCTTCATCA GCGTGGCGCT GGCGTTGTTC GTCTTCACCT CGATTCTCTA CAACTACTAC CTGGGCGAAA ACAGCCTGCG TTTCCTGTTC GGCGAGAAGA TCCAGACCAT CATCATTTAC CGTATCGCGG TGCTGGTGCT GATCATGTGG GGCGCTGTCG TCGACCTGAA AGATGTACTG GCCTTCGCCG ACATCACCAT GACCATGCTG GCGTTCGTCA ACCTGATCGC ACTGGCGATG CTGTTCAAAG TCGTCAAGCG TATCCTCAAC GACTACGATG CGCAGCGTCG GGCAGGCATC AAGACGCCAG TGTTCGACTC CAGCCAGTTC CCTGATCTGG ACCTGGACCG TAGCGCCTGG CCGGCCAACC CGAGCCGTCA GTCGACACAC GATGCCGAAC TGGCGGGCAA GCCTGCGCCT GAAGCCCGAT AA
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Protein sequence | MLEMINDFLS GKVLIVLIVG LGSYFTIRSR FVQFRHFFHM FSVFRDSLRS SAGQLSSFQA LMLSLAGRVG AGNIAGVGIA VTLGGPGAVF WMWVTALVGM SSSFIECSLA QLYKRKDSEG QFRGGPAYYI QHGLGKRWLG MVMAVLLLVT FGFAFNGLQS HAVTDSLKSA FNVDTKTTGI CLVVLLGLAF VGGIKRIAAI SDLLVPVKTL IYIAVTIYVI VLQIDHVPGM LMTIVRSAFG LDPVFGGLIG SAIVMGVKRG VFANEAGLGS APNVAAVAHV EHPVAQGVVQ AFSVFLDTFV ICTCTALLIL LSGIYDIGYD GNGIVLAQNS LAAVVGDWGR IFISVALALF VFTSILYNYY LGENSLRFLF GEKIQTIIIY RIAVLVLIMW GAVVDLKDVL AFADITMTML AFVNLIALAM LFKVVKRILN DYDAQRRAGI KTPVFDSSQF PDLDLDRSAW PANPSRQSTH DAELAGKPAP EAR
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