| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5498 |
|---|
| Symbol | |
|---|
| ID | 1187190 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 6262399 |
|---|
| End bp | 6263310 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637396817 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | NP_795222 |
|---|
| Protein GI | 28872603 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTGG AAAGCAAATG GCTGGAGGAT TTCAGTGCCC TGGCGGCCAC GCGCAGCTTT
TCCCAGGCTG CCGAGCGTCG TTTCGTCACC CAGCCGGCGT TCAGCCGACG CATCCGCAGC
CTTGAGGCCG CGCTGGGGCT GGTCTTGGTC AACCGTTCAC GCACGCCTGT AGAATTGACC
GCCGCCGGGC AGTTGTTTCT GGTGACGGCG CGCACTGTGG TCGAACAACT GGGCGAGGTG
GTGCGGCATC TGCATCATCT GGAAGGCGGG CAGGGCGAGG TCATGCAGGT TGCCGCTGCG
CATTCGCTGG CGCTCGGCTT CTTTCCACGC TGGATTGCTC AACTTCGTAA CGAAGGGTTG
AACATTGCGA CTCGTCTGGT AGCCACCAAC GTCGGTGACG CGGTGCACGC ATTGCGTGAA
GGCGGCTGCG ATTTGATGCT GGCGTTCTAT GATCCTGATG CTGCGTTGCA GATGGATGCT
GAAATCTTCC CCTCGCTGCA CTTGGGGCAT ACCGAGATGC TGCCGGTTTG CGCCGCCGAT
GCCGAGGGCC GGCCATTGTT CGATATGGAA GGCGAGGCCA GTGTGCCTTT GCTTGCCTAC
AGCACGGGGG CGTTTCTCGG GCGTTCAGTG AATTTGCTGC TGCGTCAGCG CAATTTGCGC
TTCACCACGG TTTACGAGAC AGCGATGGCC GACAGCCTGA AAAGCATGGC GCTTGAAGGG
TTGGGCATCG CCTGGGTGCC GCAGTTGAGT GTGCGCGCCG AACTGGCGCG CGGTGAATTG
GTGGTGTGTG GCGGGCCGCA ATGGCACGTT CCGCTGGAGA TTCGTCTGTA CCGTTGCGCA
TTGGTGCGCA AGGCCAATGT GCGTCTGCTG TGGCGCAAGC TTGAAAGCGC TGCGCCACCA
GAGTCATTGT AA
|
|---|
| Protein sequence | MNLESKWLED FSALAATRSF SQAAERRFVT QPAFSRRIRS LEAALGLVLV NRSRTPVELT
AAGQLFLVTA RTVVEQLGEV VRHLHHLEGG QGEVMQVAAA HSLALGFFPR WIAQLRNEGL
NIATRLVATN VGDAVHALRE GGCDLMLAFY DPDAALQMDA EIFPSLHLGH TEMLPVCAAD
AEGRPLFDME GEASVPLLAY STGAFLGRSV NLLLRQRNLR FTTVYETAMA DSLKSMALEG
LGIAWVPQLS VRAELARGEL VVCGGPQWHV PLEIRLYRCA LVRKANVRLL WRKLESAAPP
ESL
|
|---|
| |