| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5485 |
|---|
| Symbol | |
|---|
| ID | 1187177 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 6249361 |
|---|
| End bp | 6251034 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637396804 |
|---|
| Product | phosphate ABC transporter, permease protein, putative |
|---|
| Protein accession | NP_795209 |
|---|
| Protein GI | 28872590 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4985] ABC-type phosphate transport system, auxiliary component |
|---|
| TIGRFAM ID | [TIGR00974] phosphate ABC transporter, permease protein PstA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTTGAAAC GGAACTCACT CAAAAGCTGG TTCAAAAGCG GCGCGCCTGG CGTCTGGATG
AGTGCGGGCG CCGTTTCCAT CGCGGTGATC ATGACCATCG GGCTGCTGGC GGTGATCGCC
GTGCGCGGGC TGGGACACTT TTGGCCTGCT GACCTGGTGG TCGCGCAGTA CGCGGTGCCC
GATCAGCCGG CGCATGTTCT GGTCGGTGAA TTGGTCGAGC AGGAGCAGGT GCCGCGTGCG
CGCCTGAAAA GCGCTGGTCT GCCGGTGCCT GATCAGGGGC CAGAGTTCAT GACCCGTGAG
CTGTTCAAGG TTGGCAACCG TGACCTGAAC CCCAGCGATT TCACCTGGGT AGTCGGCGAG
TGGCTGAGCG GGCAAAGCAG CCCCGCAGAG CTGATGACGC TGGAGCGCCG CGAGTGGGGT
AATTTCTACG GCTATCTGGT CAACGTCAAG GAAGGTGGCA GAGTCGTGGC CGAAGGCGAG
GCGGCCTGGC CAACCCTGCA AGAACGCATC AAACGCATCG AAACGCTCGC TGACGAGCTC
TACAGCCTGG AAAAGAAAGA CATCGGCGCG ATCAATCATG GCATTGAGCG CTTGCGTCTG
CAGGCCCGCA AGCTGGAGCT GGCCGGCAAG CTGGATGCCG CTGCGCAAGC CGACATGGCG
GCAGAGCGTG CCGAGCTGGA CGCGCGCTAC AAGGTCATCG AGGGCCGTCT TGAAACGCTG
CATCAGGCCT TTGACCGTGA CAGCCTGACG GCCCGCGATG CCGACGGCAA AACAATCGAA
ATCAGCCTGG GCAAGGTGGT GCATGCCTAT CAGCCCAATG CGATGGGCAC GTTCACCAAG
CTGGGTTTCT ATTTCCAGAA GCTGTGGGAG TTTCTCAGCG ACGACCCGCG TGAGGCCAAT
ACCGAGGGCG GTATCTTCCC GGCCATCTTC GGCACGGTGA TGATGACGCT GATCATGGCA
GTGATCGTGA CGCCGTTCGG TGTGCTGGCG GCGGTTTATC TGCGTGAGTA CGCGCGTCAG
GGCCTGGTGA CCCGCCTGAT CCGCATCGCC GTGAATAACC TGGCCGGTGT ACCGGCGATT
GTGTACGGCG TGTTCGGCCT CGGGTTTTTC GTTTACGTGC TGGGCGGCTC GGTGGATCGT
CTGTTCTTTC CCGAAGCGCT GCCGGCCCCG ACGTGCGGCA CGCCTGGCCT GTTATGGGCC
TCGTTGACGC TGGCGCTGCT GGCGGTTCCG GTGGTGATCG TAGCCACTGA GGAAGGGCTG
GCGCGCATTC CGCTGACCCT GCGCGAGGGC TCGCTGGCAC TGGGTGCCAC CAAGGCCGAG
ACGCTGTGGA AGATTGTGCT GCCAATGGCC AGCCCGGCGA TGATGACCGG TCTGATTCTG
GCGGTCGCCC GCGCAGCCGG TGAGGTGGCG CCGTTGATGC TGGTGGGTGT GGTCAAACTG
GCCCCGTCAT TACCCGTGGA TGGCAACTAT CCTTACCTTC ACCTCAATCA GAAAATCATG
CACCTGGGTT TCCATATTTA CGACGTAGGG TTCCAGAGCC CCAATGTCGA GGCGGCACGA
CCGCTGGTTT ATGCCACCGC GCTGTTGCTG GTGCTGGTCA TCGCCTTGCT CAACCTGTCG
GCGGTCAGCA TTCGTAATCA TTTGCGGGAA AAGTACAAGG CGCTCGACAA TTGA
|
|---|
| Protein sequence | MLKRNSLKSW FKSGAPGVWM SAGAVSIAVI MTIGLLAVIA VRGLGHFWPA DLVVAQYAVP
DQPAHVLVGE LVEQEQVPRA RLKSAGLPVP DQGPEFMTRE LFKVGNRDLN PSDFTWVVGE
WLSGQSSPAE LMTLERREWG NFYGYLVNVK EGGRVVAEGE AAWPTLQERI KRIETLADEL
YSLEKKDIGA INHGIERLRL QARKLELAGK LDAAAQADMA AERAELDARY KVIEGRLETL
HQAFDRDSLT ARDADGKTIE ISLGKVVHAY QPNAMGTFTK LGFYFQKLWE FLSDDPREAN
TEGGIFPAIF GTVMMTLIMA VIVTPFGVLA AVYLREYARQ GLVTRLIRIA VNNLAGVPAI
VYGVFGLGFF VYVLGGSVDR LFFPEALPAP TCGTPGLLWA SLTLALLAVP VVIVATEEGL
ARIPLTLREG SLALGATKAE TLWKIVLPMA SPAMMTGLIL AVARAAGEVA PLMLVGVVKL
APSLPVDGNY PYLHLNQKIM HLGFHIYDVG FQSPNVEAAR PLVYATALLL VLVIALLNLS
AVSIRNHLRE KYKALDN
|
|---|
| |