| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5438 |
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| Symbol | |
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| ID | 1187125 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 6184525 |
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| End bp | 6189243 |
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| Gene Length | 4719 bp |
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| Protein Length | 1572 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637396755 |
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| Product | Rhs family protein |
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| Protein accession | NP_795165 |
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| Protein GI | 28872546 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.196818 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATCGCG TTGCCGATAT CGAAGCACAA CTGGACTCGT TCAAAGACAG CCTGACGCTG
TACCGTGAAC AAACCAAAAC CTGGTATGCA GAGCTGGCCG ACAAAGGCAG CCGCGCGACA
GACATGCCTT CACTGTTAGG CATGGAGCGC GTCATCAAAG CAGGGGGATC GAGTAAAGCG
GTCAGCATGA ATGACGACGA TTTCTCATAC GTCGCCAAGT GCCCTCTCGT CGGCCCGCTT
TTGATCGAGA GTAAGTTTGA GTCGCTGTAT GACATTCCTG TCGGTGACAT TCAGGTTGAT
GTTATTGCCG TTGAAGGTGG CGCCAAGACC ACCGTGATGC TGGACAAGCA AGGCAAAGGC
AGCTTTCAGG GGCAACCGGG CAAAGCTTAT AAAATTCATG TCCATGACAA AGTCACCCCC
GCTCAAATTG ATGCCCTGTT CAAATCCTAT GACGGTCTGA GTGCTGACCT GGAAGGCTTC
CTGCGCAAGG AGTGGGCAGG CTTCAAACCC CAGTGGTCCA ATCAAAGCGC TTCGGCGACA
GCAATGGCGA TCGGCGCAGG CATTCTGGAG GGTGGCTGGG AAGCCATTAA AGGCGTGTGG
GACGGCATCA CCAAAGCGCT GGATATTTTG CAAAACCCTA AGAAATTTGC GGAGGAATTG
GGCGCAGGTG CTGACGAACT GGTCAAACTG GCCAAAGAAG CGCCTGATGT CATGAAAAAA
GCCATGTTGC TTGCCAGCGA CGAGGCGGCC CTTTTCCTGA TGGTTCGCTG CGCCTCGATA
TGGGTGGCCG GATTACCGCC GACCCAGGCT GCAGGCCAGA CGGCGAAGAT GACCTCGGCA
GCCACTATCG GCATCCTGAT CGACATTGTC ATATCCGTCG TGTTGACCTT GGCAGCCGAG
GGCGCAGGGC TGTTTTATCT GGCTGCACGC CTGGCCAAGT ACGGCAAGAT CATCCTCAAC
GCGGTCACCG GCTTTGTAAA AGCCGTGTTC AATATCATCA AAGGCTTCAT GGGCTATGTG
AGCAAATACG TCGCGGTAGC AGCTCGCGGC GCAGTATCAG CCACTAACCA AGGCGTCGCC
CAACTACGTT TTGACGGCAA AAGAAACACC ACAGTCAGAA CCAGTAAACG TCTCGACGAT
GCAGCCAGCC AATCCAGGAC ACATGACGGT AAAAGTGCAG CGGCGGCGCA GGACACTTGT
GTCAACGGTT GCCCGGTTTC AATGGTGACA GGGGAAGAGC TGCTCACCCT GACCGATGGG
CAACTCGATG GCCTGCTGCC CTTTGAATGG ACGCGACTGT ATCGCACCAG CGCGGTAGAA
ACTGACAGCC GTCTCGGTTA TGGCTGGAGC CATGCGTTAT CCCATCGTCT TCAACTTGAC
GATGAGGGAG TGCTATGGAT CGACAATGAA AACCGCCAGA CCCGCTTCCC GATGCCGACC
GAGCATCGCC CTGCTATCAC CAATAGCTTG GCCAAAGCGG CGATCTATCT CGGCAATACG
CCCGGCGAGC TGATCCTGAC TCAAGCTGGC AAGCAACCAC GCTTCTACCA CTTTCGTGCC
GGGCGCCTGA TTACTATCAG CGACGCCTAC GACAACCAGC TTCAAATCAC TTACGACCTT
GTAGATCGCG TGCAGCGGAT CGACAACAAC GCCGGGCGCT CTCTGCTTCT GCGTTATGAA
GATCGCCATA TCGTCGCAGT GGATTATCAG CAGCAACGGC CCGACTATAC CGATCAGGGC
GAACGGCAAG ATCCTTGGGC GACCGTACAG ACATTGGTGA CCTACCAGTA CAACGTGAAA
GGTCAGCTTG TCAGCGCAAC CACCGCGGCG GGCGAAAGCG AGCACTACCG TTACAACGAA
CAAAACGTGA TCCAGGAGCG CCAGCTTGCT GGAGGCGCGA GCTTTTTCTG GGAATGGGAG
AACGAAGGCA AGTCATCGCG AAGCATCCAT CACTGGGCCA ACTTTTCTCA GATGGACTCG
CGTTACATAT GGGACGACGC AGGCCAGGTC ACTGTTCTCA ATGCCGATGG CAGTGAACAG
GTTTATGTAC ACGACGAAAA TGCGCGCCTC ATCAGTGAAA CCACCCCTGA TGGAGCTGAA
ACGCAAAAAG CTTATGACGA GAAAGGCCGA CTGATCGCGG AGAAAGACCC GCTGGGTGCG
ATCACTGAAT ACCGCTATGA CGAAGACGGA CTGCTGATCG CGTTGATTCC ACCGGAAGAC
GAACCGGTAG CCTACGAATA CCATCGCGGC TTCGTCAGTG ATGTTCGTCG GGGTAAAGCA
ACTTGGAAAT ATCAGCGTAA TGAACAAGGC GACATTACCG TCCAGACCGA CCCGGACGGC
AACGAAACCC ATTACAGCTA TGACCTGCGC GGCCGCTTGC TGGAGATCCG TCACCCCGAC
GGCAGCCGTC ATCAACTGGG CTGGAACGGC CTAGGCCAAT TGCTCGAAGA GCGTCTGCCT
GATGGTGGTC AGCGTAAATA CCGTTACGAC GCCCTGGGTC GGCAGATCAC CCGTCAGGAA
GAAACCGGCG CCATCACCCA TTACCAATGG GACGCAGCCA ACCGCCTGGC ACAAGCCACT
CTGCCCGGCG GCGCCACGCG TGCTTTCTCC TACAACGCCT ACGGCAAAGT CACCGCCGAG
CGCGACGAAC TGGGCCGCAT CACCCGCTAC GAATACGCCG ACAACCTGCA TCTGGTCAGC
CGCCGTATCA ACCCGGACGG CAGCCAGCTG CGTTATCGTT ACGACAACGC GCGCCTGCTG
CTCACCGAGA TCGAAAACGA GCGCGGCGAG CACTACCACC TCGACTACTA CAGCAACGGC
CTGATCCAGC GAGAAACCGG TTTCGACGGC CGCAGCACCG CCTACGAGTA CGACCTCAAC
GGCCAGTTAC TGAAGAAAAC CGAATTCGGC GACGACGGCA GCGAGTTGTC CACTGAATAC
CAACGTGATG CCGCTGGCCG TCTGCTGGTG AAAACCCTGG CCGATGGCAG CGCGATCCAT
TACCGCTACG ACGCCCTCGG GCGTCTGGTC AGCGTCGACG ACGGCCACTG GCCGCTGGCT
TACGAATACG ACTTGCAGGA CCGCCTGATC ACCGAGCATC AGGGCTGGGG CACGCTGCGT
TACGAGTACG ACACTGTCGG CCAACTGAAA CACTGCCGCC TGCCTGACGG CAGTAAGCTC
GATTACCACC ATCAGCGTGG TGGCCAGCTC GGCAGCATCG ACCTCAACGG CTCGCGCCTG
ACCACCCACC AGTTCAGCGC CGGCCGCGAA CAGCAACGCC AGCAAGGTTT GTTGCTAAGT
CAGTATCAGT ACGACGAACA AGGCCGACTG CAAGCACACA GCGTCAGCCA ACAGGATCGC
CACCTGTTCC ACCGCCACTA CGCGTACGAC GCAAACGGCA ATCTGGCAGG CGTCAACGAC
AGCCGAAAAG GCAACCGTAG CTATCATTAC GATCCGCTCG ACCGCCTGAT CAACGTGCGT
GGCACCACCC CGGAAAGCTT CGCCCATGAT CCCGCAGGCA ACCTCCTCGG CCAAGGCGAT
CAACCGGCTG CCAACCTGGC CAACGTCAAA GGCAACCGCC TGCTGATGCA GGGCGACCGC
CATTACGATT ACGACGCCTA CGGCAACCAG ATCCGCGAAC GCCGCGGCAC CGGACAAAAG
CTCGTCACCG AGTACCGCTA CGACTGCCAG CACCGCCTGA TCGGCGTCAG CCTGCCGGGC
GGAAGCGTGG CTTCGTACAA ATACGACGCC TTTGGCCGGC GCATCGAAAA GACCATCGAT
GGCCACATCA CCGAATTTCT CTGGCAAGGC GAACGCCTGA TCGCCGAAAG CGCCGACAAC
CGTTACCGCA GCTACATCTA CGAGCCGGGC ACCTTCCGAC CGCTGGCGAT GCTGGACGGC
GAAGGCCCTC TGAAAGCCGC ACCGTTCTAT TACCAGCTTG ACCACCTCGG CACGCCGCAA
GAACTCACTG ACTACAGCGG CGAGATCATG TGGTCGGCCA AATACCGGGC TTACGGCAAC
CTCGCCACCC TCGACATCGC CGAAATCGAA AACCCGCTGC GCTTCCAGGG TCAGTACTTC
GATGCGGAAA CGGGCTTACA TTACAACCGG CATCGCTATT ACAATCCGGG CACTGGACGG
TTTTTGACCC CGGACCCGAT CAAGCTGGCG GGTGGGTTGA ACAACTACCA GTATGTGCCT
AACCCGACGG GGTGGGTGGA TCCGTTGGGG TTGAGTGGAG AATGTCCAGA TTCAGAAAAA
AACAAAATCC CAGTTGAGGA AGCATCCAGT CCATCCAACT CTTACGACAA CTCGGAAGAG
CTCAGACCGC CTGAATCAAA TGGCAGAAGA TATGCAGCTG GTAAACATTA TGTAAATCCC
CAGGACATAA ATTTTTCACA GCGCGGCGTA CACGGCAATG AATATGAAGC AAAAATGTCA
CAAGGTGATT GGGATTGGTC CCGACCAGGT TCCGCTCTTA ACGTAATGGA GGTTGACGGT
CAACTTGTGT CTTATGACAA CCGAAGGCTA AGAGCCGCTA GATCTGTCGG CTTAAACTCA
ATACCTATAC AAATTGTACT GGCCGAAGAT ATAATGCCAG GTTCGAAAAA AACTTGGGAG
AAAGCTTTTA AACTCAGAAG AGAAGATAGA CGAAATCTTC TAGATGGTGA GCCTGTACCT
CCAAAAGGAC TAAACACACT ACCTAAAATT AATGAATAG
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| Protein sequence | MDRVADIEAQ LDSFKDSLTL YREQTKTWYA ELADKGSRAT DMPSLLGMER VIKAGGSSKA
VSMNDDDFSY VAKCPLVGPL LIESKFESLY DIPVGDIQVD VIAVEGGAKT TVMLDKQGKG
SFQGQPGKAY KIHVHDKVTP AQIDALFKSY DGLSADLEGF LRKEWAGFKP QWSNQSASAT
AMAIGAGILE GGWEAIKGVW DGITKALDIL QNPKKFAEEL GAGADELVKL AKEAPDVMKK
AMLLASDEAA LFLMVRCASI WVAGLPPTQA AGQTAKMTSA ATIGILIDIV ISVVLTLAAE
GAGLFYLAAR LAKYGKIILN AVTGFVKAVF NIIKGFMGYV SKYVAVAARG AVSATNQGVA
QLRFDGKRNT TVRTSKRLDD AASQSRTHDG KSAAAAQDTC VNGCPVSMVT GEELLTLTDG
QLDGLLPFEW TRLYRTSAVE TDSRLGYGWS HALSHRLQLD DEGVLWIDNE NRQTRFPMPT
EHRPAITNSL AKAAIYLGNT PGELILTQAG KQPRFYHFRA GRLITISDAY DNQLQITYDL
VDRVQRIDNN AGRSLLLRYE DRHIVAVDYQ QQRPDYTDQG ERQDPWATVQ TLVTYQYNVK
GQLVSATTAA GESEHYRYNE QNVIQERQLA GGASFFWEWE NEGKSSRSIH HWANFSQMDS
RYIWDDAGQV TVLNADGSEQ VYVHDENARL ISETTPDGAE TQKAYDEKGR LIAEKDPLGA
ITEYRYDEDG LLIALIPPED EPVAYEYHRG FVSDVRRGKA TWKYQRNEQG DITVQTDPDG
NETHYSYDLR GRLLEIRHPD GSRHQLGWNG LGQLLEERLP DGGQRKYRYD ALGRQITRQE
ETGAITHYQW DAANRLAQAT LPGGATRAFS YNAYGKVTAE RDELGRITRY EYADNLHLVS
RRINPDGSQL RYRYDNARLL LTEIENERGE HYHLDYYSNG LIQRETGFDG RSTAYEYDLN
GQLLKKTEFG DDGSELSTEY QRDAAGRLLV KTLADGSAIH YRYDALGRLV SVDDGHWPLA
YEYDLQDRLI TEHQGWGTLR YEYDTVGQLK HCRLPDGSKL DYHHQRGGQL GSIDLNGSRL
TTHQFSAGRE QQRQQGLLLS QYQYDEQGRL QAHSVSQQDR HLFHRHYAYD ANGNLAGVND
SRKGNRSYHY DPLDRLINVR GTTPESFAHD PAGNLLGQGD QPAANLANVK GNRLLMQGDR
HYDYDAYGNQ IRERRGTGQK LVTEYRYDCQ HRLIGVSLPG GSVASYKYDA FGRRIEKTID
GHITEFLWQG ERLIAESADN RYRSYIYEPG TFRPLAMLDG EGPLKAAPFY YQLDHLGTPQ
ELTDYSGEIM WSAKYRAYGN LATLDIAEIE NPLRFQGQYF DAETGLHYNR HRYYNPGTGR
FLTPDPIKLA GGLNNYQYVP NPTGWVDPLG LSGECPDSEK NKIPVEEASS PSNSYDNSEE
LRPPESNGRR YAAGKHYVNP QDINFSQRGV HGNEYEAKMS QGDWDWSRPG SALNVMEVDG
QLVSYDNRRL RAARSVGLNS IPIQIVLAED IMPGSKKTWE KAFKLRREDR RNLLDGEPVP
PKGLNTLPKI NE
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