| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5427 |
|---|
| Symbol | |
|---|
| ID | 1187114 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 6170208 |
|---|
| End bp | 6171761 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637396744 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_795154 |
|---|
| Protein GI | 28872535 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCCGT TGCCTGCGTT CAGTATTTTG CAGTTTGATC CGTTGAAACG TTCGGGTCCT
GCGCTGACGG TCGAACGTGA TACACCGGTC GATAGCAAGC CTATTAATGA CGTGCGTTGT
CGCTTCCGTA CGTGCTACCC GACCGAAGTT CAGGCGCTGG ATCTGACCGC GCTGAATTAC
TCGGTGAAAG GCGGTGGTTC GTTGCTCAGC CTGCGCCTGG AGATGAGCGC TGAAGGTCAC
TTGGGTGAGC TTGAACTGAG CCGCCTGCGT CTGCACTTTG CAGGCGAGCG CTATATCAGC
CAGATGCTGT ACCTCTGCCT GCTACGCAAT CTCGAGGGTA TCGAGCTGAT CCCTCTGGAC
GCTGCCGGCA AGCCCATCGA CGGTGTCAAT GGCGCGCCAA TGGCGTTCAA GATGCCGGGC
GACCGTGTAC AGCCGGTAGG GTTTGCCGAA GAAGAGGCGT TGATCCCGTA TCCGCTGAAC
ACGTTCCGCG GTTATCGCTA CCTGCAGGAG TACTTCGCGT TTCAGGACAA GTTCCTGTTC
GTCGACATCA ACGGTCTGGA TCTGCTCAAC GCACTGCCAG AAGAGACACT CAAACAAGTG
CGCGGCCTTG AGTTGCGCTT TGATATTCGC AAGAGCGGCA TTCAGCGTCT TCGTCCCACC
CTGGATAACG TAAAGCTGTA TTGCACGCCG ATCGTCAACT TGTTCAAGCA CGACGCCTTG
CCGATTCGCC TTGATGGCAA GCAGGACGAG TACCTGCTGC TGCCCGCCGA ATATGGCCTG
GAAACCTGTG GTGTGTTTTC GGTTGAAACC GTGACCGGTT GGAAGCCGGG AGGTCTTGGC
TATCAGGATT ATGTGCCGTT CGAATCCTTT GAGCACGACC CCAGTTTCGA CGTGCCCAAC
AGCCGTCCGC ATTACAGCAT TCGCCAGCGT TCTTCTTTGC TCCATGAAGG CCTCGACACT
TATCTGAGTT TCGGCATTCG CCATACAGAA GCGCACGAAA CCCTGTCGAT CGAGTTGATG
TGCACCAATC AGAACCTGCC ACGCAAACTC AAACTGGGCG AAATCAACGT GGCCTGCGAA
GATACGCCGG AGTTTTTGAG TTTCCGCAAT ATCACACCGG CTACCTCCAG TTTCGCGCCC
CCGCTGAACC GTGACTTCCT GTGGAAGTTG ATCAGCAATA TGTCGCTCAA TTACTTGTCT
CTGGCTGACG TCAATGCGCT GAAGGTGATT CTGGAAACCT ACGATTTGCC CCGTTACTAC
GACCAGCACG CGGAAAAAGT CAGCAAGCGC CTGTTGGGCG GTTTGAAATC GATCAAGCAT
CAACACGTGG ACAGATTGCA CCGAGGGTTA CCGGTACGCG GATTGCGCAC TGAGCTGACC
ATCGACCCGG AAGGGTATAT CGGCGAAGGC GACATGTTTG TATTCGCTTC GGTTCTCAAC
GAGTTTTTCG CGCTTTACGC CAGTCTCAAT TCGTACCACG AGCTGCGGGT AAAAAGCACA
CAGGGAGAGG TGTACCAATG GACACCACGT ATGGGCCTCC AGCCCCTGCT TTAA
|
|---|
| Protein sequence | MRPLPAFSIL QFDPLKRSGP ALTVERDTPV DSKPINDVRC RFRTCYPTEV QALDLTALNY
SVKGGGSLLS LRLEMSAEGH LGELELSRLR LHFAGERYIS QMLYLCLLRN LEGIELIPLD
AAGKPIDGVN GAPMAFKMPG DRVQPVGFAE EEALIPYPLN TFRGYRYLQE YFAFQDKFLF
VDINGLDLLN ALPEETLKQV RGLELRFDIR KSGIQRLRPT LDNVKLYCTP IVNLFKHDAL
PIRLDGKQDE YLLLPAEYGL ETCGVFSVET VTGWKPGGLG YQDYVPFESF EHDPSFDVPN
SRPHYSIRQR SSLLHEGLDT YLSFGIRHTE AHETLSIELM CTNQNLPRKL KLGEINVACE
DTPEFLSFRN ITPATSSFAP PLNRDFLWKL ISNMSLNYLS LADVNALKVI LETYDLPRYY
DQHAEKVSKR LLGGLKSIKH QHVDRLHRGL PVRGLRTELT IDPEGYIGEG DMFVFASVLN
EFFALYASLN SYHELRVKST QGEVYQWTPR MGLQPLL
|
|---|
| |