| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5426 |
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| Symbol | |
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| ID | 1187113 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 6169237 |
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| End bp | 6170244 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637396743 |
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| Product | hypothetical protein |
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| Protein accession | NP_795153 |
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| Protein GI | 28872534 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3520] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03347] type VI secretion protein, VC_A0111 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACACCA CGTATGGGCC TCCAGCCCCT GCTTTAAGCG GGCTGACCCT CGGTATACGC
GAGTACTCGC TGTTTCAGGC CGTGCTGCTG GTCATTGACC GGCTGCGCGA TGCACACCCG
CACCTGAGCG AAGACGATCT GTACGACCAG CTTGAATTTC AGGCCAACCC AAGCCTCGGC
TTTCCGTCGA GTGATGTCAG TCGCGTGGAG TTTTTTCACG AGCACGGGCA GATGCGCGCG
CGCATGCAGT TCAACCTGAT CGGCCTGGTC GGTTCCGGCT CGCCATTGCC GGCGTTCTAC
GGCGAACAGG CGCTGGGCGA CAGCGAAGAC GGCAACCCGA CGCGCAACTT CCTCGACCTG
TTCCACCACC GTTTGCAACG GCTAATGTTG CCGATCTGGA AGAAATATCG CTACCGGGCC
AGTTTTGAAA GCGGCGCGCT CGATCCGTTT TCTGCACAGC TGTTTGCCTT GATCGGCCTG
GGTGGCGAAG AGATTCGACG TGCTCAGGAA CTGAACTGGA AACGCCTGCT GCCCTACCTG
GGCTTGCTCA GTCTGCGTGC GCACTCGGCT GCGCTGATCG AGGCAGTGCT GCGTTATTAC
TTCAAGCATG CCGAACTGAC CATTGAGCAG TGCATCGAGC GCCGCGTGGA GATTCTCGAC
GAACAGCGCA ATCGCTTGGG GAGTGCCAAC AGCATGCTCG GTGAGGACCT GGTGTTGGGC
GATCACGTGC GTGACCGTAG CGGCAAGTTC CGCATTCACA TCCGCGAACT CGACTGGCAA
CGCTTTCACG AATTTCTGCC GATCGGTTTC GGCTATCAAC CGCTGTGTGC GCTGGTGCGC
TTCACGCTGC GTGATCCGCT CGACTACGAC ATTCGACTGG TTCTGCGCCA GGAAGAAATC
CGCGAGCTGC GTATAGGTGA ACAAAACGCC TGTCGATTGG GGTGGACCAG TTGGCTCGGT
CGCGAAAAAG CGGACGGTGT GGTGACCTTG GGCAGCAAAA TTCATTAA
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| Protein sequence | MDTTYGPPAP ALSGLTLGIR EYSLFQAVLL VIDRLRDAHP HLSEDDLYDQ LEFQANPSLG
FPSSDVSRVE FFHEHGQMRA RMQFNLIGLV GSGSPLPAFY GEQALGDSED GNPTRNFLDL
FHHRLQRLML PIWKKYRYRA SFESGALDPF SAQLFALIGL GGEEIRRAQE LNWKRLLPYL
GLLSLRAHSA ALIEAVLRYY FKHAELTIEQ CIERRVEILD EQRNRLGSAN SMLGEDLVLG
DHVRDRSGKF RIHIRELDWQ RFHEFLPIGF GYQPLCALVR FTLRDPLDYD IRLVLRQEEI
RELRIGEQNA CRLGWTSWLG REKADGVVTL GSKIH
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