Gene PSPTO_5420 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_5420 
Symbol 
ID1187107 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp6161765 
End bp6163096 
Gene Length1332 bp 
Protein Length443 aa 
Translation table11 
GC content57% 
IMG OID637396737 
Producthypothetical protein 
Protein accessionNP_795147 
Protein GI28872528 
COG category[S] Function unknown 
COG ID[COG3522] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03353] type VI secretion protein, VC_A0114 family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.957862 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATCCC ATAAAGTCAT TTGGCAGGAA GGCATGTTGC TGCGCCCGCA GCACTTCCAG 
CACAACGATC GCTACTACGA TCACCAGATG AAAACCCGTA CCCAGTTATT GGGGAGCTAC
ACGTGGGGTT TTCTGAGTCT GGACATCGAC CTGCAGTTTC TCAATATGGG CAAACTGGTG
ATCAGCCATG CGTCGGGAAT CCTGCCGGAT GGCAGCCTGT TCGAGTTGGG GGGCAACACT
GAGCCGCTGG CGCTCGATGT GCCGCCCAAT ACGGGTAATA CTCCGATCTA TCTCGCGCTG
CCGCTGGTCA CGGGTAACCA CATTGAGTCG CGCCGCCCCG AGCAATCTGA TGTGCTGGCG
CGCTATACCG CCTACGAGGC TGAGGTGTCC GACTCCAACG CTGGCGATGA CTCCTCGAGT
CAGGTCAGTT GTGGTCGTCC CGACTTCAAG CTGTTGCTTG GCCAGCAGCA AAGCGATCAG
GCTTACGTGA AGCTGAAGGT TTGCGAAGTA CTCGACACGA CGCCGGATGG CGTAATCAGC
CTTGATCCCG ATTTTGTACC GACCTACATA CAGGCTCACG CTTCCAGCTA CCTGCTGTCT
TGCCTCAAGG AAGTCATCAG CATGCTCAGC CACCGGGGCG ACACCATCGC TGACCGGATC
CGTTCCAACG GCAAGGTAGG GGGTGCCGAA GTCGGCGACT TCATGATGCT GCAACTGATC
AACCGTACCG AGTTGCTGCT GCGTCACTAT CTGGACCTTG AACAGGTGCA CCCTGAAGAG
TTGTATCGCA CGCTGCTGAC CATGCTTGGC GATCTGGCGA CGTTTTCGAG CGATAGCAAG
AGACCGCGTC TGGACAGCCG CTACCAGCAC AGCGATCAGG GAGCCAGCTT CCGCAAGCTG
ATGGAGGCGA TCCGTCAGGT GCTGTCGATG GTGCTGGAAC AGCACGCCAT CGAACTGGTT
CTACAGGCGC GTCAGTACGG CATCATCGTA TCGCCTCTGC ATGATCACAA GCTGTTGGGA
TCGGCGTCGT TCGTTCTGGC AGCCAGCGCA AATTGCGACT CCGAGGAACT GCGTCACCGT
TTGCCAGCGC ACCTCAAGGT CGGTCCTGTG GAGCGTATCC GCCAACTGGT CAACCTTCAT
CTGCCTGGTA TCAAGGTCAA GCCATTACCG GTGGCCCCGC GGCAGATTGC GTTCCATACC
AACAAAACCT ATTTCATCCT CGAACTCAGT TCCGAAGATC TGGCGCAACT CGAGCGCTCC
GGCGGCTTCG CGTTCCATGT GTCCGGCGAA TTCGCCGAGC TTGAACTGAA ATTCTGGGCT
ATCAGGAACT GA
 
Protein sequence
MKSHKVIWQE GMLLRPQHFQ HNDRYYDHQM KTRTQLLGSY TWGFLSLDID LQFLNMGKLV 
ISHASGILPD GSLFELGGNT EPLALDVPPN TGNTPIYLAL PLVTGNHIES RRPEQSDVLA
RYTAYEAEVS DSNAGDDSSS QVSCGRPDFK LLLGQQQSDQ AYVKLKVCEV LDTTPDGVIS
LDPDFVPTYI QAHASSYLLS CLKEVISMLS HRGDTIADRI RSNGKVGGAE VGDFMMLQLI
NRTELLLRHY LDLEQVHPEE LYRTLLTMLG DLATFSSDSK RPRLDSRYQH SDQGASFRKL
MEAIRQVLSM VLEQHAIELV LQARQYGIIV SPLHDHKLLG SASFVLAASA NCDSEELRHR
LPAHLKVGPV ERIRQLVNLH LPGIKVKPLP VAPRQIAFHT NKTYFILELS SEDLAQLERS
GGFAFHVSGE FAELELKFWA IRN