| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5418 |
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| Symbol | |
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| ID | 1187105 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 6157343 |
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| End bp | 6160921 |
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| Gene Length | 3579 bp |
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| Protein Length | 1192 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637396735 |
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| Product | hypothetical protein |
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| Protein accession | NP_795145 |
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| Protein GI | 28872526 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGATCCGGC GGCGGTCCAG CCGCAGTCAC AGCCGTAAAC AGGGACGCAT GATGAAAAAC
TTCTTCAAGA AAGTCGGCGC ATTCCTGCGC AAGACATGGG TCTGGACGCT GCTGCTGGTG
CTGTTTGTTG CGCTGTTGGT GTGGTTCGTC GGACCGCTGC TGGCGGTTGA TGATTACAGG
TTCTGGGAAA GCTCCACCTC GCGTTTGCTG ACTATCAGTG TGCTGTTCCT GATCTGGGGC
CTGACGATGG TTTTCGTCAG TTGGCGCTCG GGTGTTCGCA AGAAAGCCCT CGAAGAAAGC
GAAGACGGCC AGGATCGCAT CCGCCGAGAA GAGCAGATCG ACGAAGAGCA GAAAGAACTG
AAAACGCGTT TCAAGGACGC GTTGAAAACG CTGAAAACGT CGAGCCTTTA TCGCGGCCGT
AGCGAACGCT GGCGCAGCGA TCTGCCTTGG TACCTGCTGA TTGGTCCGCA AGGCAGTGGT
AAAACCAGCC TGCTGGATTT CTCGGGCCTT GAGTTTCCAA TCAACAAGAT TGAACGCAAA
CTGACACGAG ACACTCTGGG CACCCGTCAC TGTGACTGGT ACTTCGCCGA TCACGGCGTG
CTCATCGACA CCGCTGGCCG CTACCTGACC CAGCCTGACG CCGAAGTCGA CGGCAGTGCC
TGGAACACCT TGTTGGACCT GCTGCGCAAA CGTCGCCGCA ATCGTCCGCT GAACGGTGTA
CTGGTGACCA TTCCGGTTGA AACCCTGCTG AATGAAAGTG AGCAGAACCT TGAAACACTC
GCTCGTCAGG TGCGTGCGCG TTTGCAGGAC GTGCATCAGA AACTGCACGT CGATGTGCCC
ATCTATCTGG TTCTGAGCAA GGCCGACCGC TTGTTGGGCT TTGAAGAGTT CTTCGATCAA
CTGACGCGTG AAGAAAGCGA TCAGGTCCTC GGCACGAGCT TTCGCAAAGA GCAGATGGGC
ACCGATGTGG CGGTGTTGCG CACCGAGTTC GAAGAGCTGC TGCGTCGCCT GAACAGTCAG
GTGATCATGC GCATGCATCA AGAGCGTGAC ACGCAGCGTC GTGGTCGTAT TCTCGACTTC
CCGCATCGAC TGGGGCAGAT CGGCGAGCGC CTGTGCCTGT TTGTCGATCT GGCATTCACG
GGTAACCGCT ACCAGCGCGT CAGTCAGTTG CGCGGCTTCT ACCTGACCAG TGCGCCGCAT
CTGACAGAGG AAATGGACGC TACCACCGCT GGCATCGGCG CCAATCTGGG CATGAGTGCA
GGTGTACTGC CAACGCTTCG CAGCGGCCGA TCACGATTCA TCCATCATCT GCTCAGCCGG
GTGATCTTTC CGGAAGCCGA TCTCGCGGGA CTGGACAAGC GTGAGCGCAG TCGCATCCAT
TGGGGCCAAC GTGCGTTGTA CGTGGGCGCG CTGGTAGCGT TGGCGCTGTT CGGCGTACTG
TGGGCTGGCG GCTTTTCGGC CAACTATTCA CGTCTGGAAA ACCTGCGCAG TCTGGCTCAG
ACCTGGACTC AGCAACGTTC GGCGCTGAGC GCCCGCGATG ACTCCATGGC GGTGCTCAAA
ACGCTCGACA CCAGTTACGC AGCCACTCAA GTGTTCCCGG AAAAAGGCGA CGTGAGTTAT
CACGAGCGTG GCGGCCTGTA TCAAGGCGAA GACGTCAATC CGGTGGTCAG GGTCGCTTAC
GAACGTGAGC TTCACGACCA GTTGCTGCCC CGCGTTGCAA ACTTGCTGGA AAGCCAGATC
CGCGCCAACA CCAAGGATCG CGACCGCCTG CTCAACAGCC TGCGTGCGTA CCTGATGCTG
AACATGACGG ATCGCCGCGA CGCTCAGTGG CTCAAGGATT GGGTCGCTAC TGAATGGTCC
CAGCGCTATA CCGGCAACAC CGCGGTACAG AACGGTTTGA ACACCCATTT TGATCGTTTA
TTGAAACAGC CATTCAGCTA TCCGTTGAAT GATCCGCTGG TGGCTCAGGC GCGTCAGATT
CTGCGTAGCG AGTCTTTGGC GACTGTGGTT TACCGCATGC TGCGCGAGCA GGCCCGTAAT
CTGCCGGAAT ACACTTTGGG CCAGCACCTT GGTCCTCAGG GTGCGCTGTT TGTCGGCACC
GATTACACGA TCCCCGGCTT CTATACCCAA CAGGGCTACC AGCAGTACTT CTCGGTTCAG
GGCACCAAGC TGGTTACTGA CATCCTTAGT GATAACTGGG TGCTGGGTGA AGGTGCCGGT
CTCAGCACGA TGGACTTGCG CCGCCTGATG GTTGAACTGG AGCAGCTGTA CTTCCGCGAC
TACGCCAACT ATTGGGGGGA GGCGATAGGT GAGGTCCAAC TGCCAGCAAT CAATGACTTT
GGGGAAGGCG CTGAGCAGTT GGCAGGTCTG ACGTCAGCCA ACTCCCCGGT CATCCAGTTG
CTGATAGAGG TGCGTGAAAA TACACGCTTC CCGGTGGTTG CCGATTCGGC GGAAGAAGCT
GCCGATGCAG CAGGGCAACT GGCAGAGAAT GGTGGCAAGC TTGGCAAACT GGCCGTTGCC
GCAGCAGGCA AGGCATCTGA TGCATTGGCG AAAAAGCTGC CGGATACCGC GAGGAAGTCT
CTGCAAAGTC GCTTCGAGCC GTTGCACCGC TTGCTGGATG ACAACAATGG GCCGACTGCC
GACCTGACGC CTGCCCTGGC CGCTCTTAAT GAGCTGCAAC TGCAGATGGC GAGCCTTGCA
CGTTCCAGCT CGCCGGATCA GGCCGCCTTT GAAATGGCCA AAAGCCGAAT GGGTGGCCAG
CGCGACGCGC TGAGCAATCT GCGCACGGCG TCCGGTCGTT TGCCGCGTCC GGTGGGCGTA
TGGTTCAACG TTCTGGCTGA AGACACCTGG CGTCTGGTGC TGGGCGATTC CTATCAGTAC
CTGAACCAGC GCTACCAGAG CGAGCTGTAC AGCTTCTATG GCAAAGCGAT CAGCAAGCGC
TATCCGTTCG ACGCGCACAG CGCCAGCGAT GTGGCAATCA GCGACTTCCG TGAGTTCTTC
AAGGCTCAGG GCATTGCCGA TCGCTTCTTC GATAACTACA TGCGTCCGTT CGTGAGTGGC
GATGCAGGCA ACTATCGCAT GCGTAGCGTC GATGGCTACA GCCTGCCGGT TTCCAAGGTC
TATCTCGACC AGATGGCCGC GGCACTGGTG ATCCGCCAAA GCTTCTTCGC CGACAACCCG
GCCGAGCCGC AGGTGCAGTT CAAGCTGGAG CCTTACACAC TTGACCCGGC TGTCAGCCGC
TCCGAGTTCA AGTTTGGCGA CAAGACCATT GAATACCGTC ACGGTCCGAT CGTACCGGTG
TCCTTCAAAT GGCCTACAGA TGCGGAAGAC GGCCGCACCA GCCTGGTACT CGACAGAATG
GTGGGTCGTC CGCTGGGTCT TGAGAAGAAT ACCGGCCCAT GGTCGCTGTT CCGTCTGTTC
GACCTGATGC AGACCGAATA CCTGACCGGA CGTGACGTGT TGGTGCTCAA GGCTGACGTG
GGTGGTCTGC GCGCCAACTA CCTGTTGACC AGCCAGCGTA CGCCGAACCC GTTTGACATG
GGCGCACTGC GTACCTTCCG CATGCCGGGG CAGCTTTGA
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| Protein sequence | MIRRRSSRSH SRKQGRMMKN FFKKVGAFLR KTWVWTLLLV LFVALLVWFV GPLLAVDDYR
FWESSTSRLL TISVLFLIWG LTMVFVSWRS GVRKKALEES EDGQDRIRRE EQIDEEQKEL
KTRFKDALKT LKTSSLYRGR SERWRSDLPW YLLIGPQGSG KTSLLDFSGL EFPINKIERK
LTRDTLGTRH CDWYFADHGV LIDTAGRYLT QPDAEVDGSA WNTLLDLLRK RRRNRPLNGV
LVTIPVETLL NESEQNLETL ARQVRARLQD VHQKLHVDVP IYLVLSKADR LLGFEEFFDQ
LTREESDQVL GTSFRKEQMG TDVAVLRTEF EELLRRLNSQ VIMRMHQERD TQRRGRILDF
PHRLGQIGER LCLFVDLAFT GNRYQRVSQL RGFYLTSAPH LTEEMDATTA GIGANLGMSA
GVLPTLRSGR SRFIHHLLSR VIFPEADLAG LDKRERSRIH WGQRALYVGA LVALALFGVL
WAGGFSANYS RLENLRSLAQ TWTQQRSALS ARDDSMAVLK TLDTSYAATQ VFPEKGDVSY
HERGGLYQGE DVNPVVRVAY ERELHDQLLP RVANLLESQI RANTKDRDRL LNSLRAYLML
NMTDRRDAQW LKDWVATEWS QRYTGNTAVQ NGLNTHFDRL LKQPFSYPLN DPLVAQARQI
LRSESLATVV YRMLREQARN LPEYTLGQHL GPQGALFVGT DYTIPGFYTQ QGYQQYFSVQ
GTKLVTDILS DNWVLGEGAG LSTMDLRRLM VELEQLYFRD YANYWGEAIG EVQLPAINDF
GEGAEQLAGL TSANSPVIQL LIEVRENTRF PVVADSAEEA ADAAGQLAEN GGKLGKLAVA
AAGKASDALA KKLPDTARKS LQSRFEPLHR LLDDNNGPTA DLTPALAALN ELQLQMASLA
RSSSPDQAAF EMAKSRMGGQ RDALSNLRTA SGRLPRPVGV WFNVLAEDTW RLVLGDSYQY
LNQRYQSELY SFYGKAISKR YPFDAHSASD VAISDFREFF KAQGIADRFF DNYMRPFVSG
DAGNYRMRSV DGYSLPVSKV YLDQMAAALV IRQSFFADNP AEPQVQFKLE PYTLDPAVSR
SEFKFGDKTI EYRHGPIVPV SFKWPTDAED GRTSLVLDRM VGRPLGLEKN TGPWSLFRLF
DLMQTEYLTG RDVLVLKADV GGLRANYLLT SQRTPNPFDM GALRTFRMPG QL
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