| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5414 |
|---|
| Symbol | |
|---|
| ID | 1187101 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 6152531 |
|---|
| End bp | 6153547 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637396731 |
|---|
| Product | lipoprotein, putative |
|---|
| Protein accession | NP_795141 |
|---|
| Protein GI | 28872522 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCGTG TTTTCAAAAA AAATAGCGTA TTCGCGATAA TATTTGCAGC CTGTAGCTGG
GGAGGGTTTC TTGACCGTGC GTATGCAGAG GCCTGCCCGT CTGAGGATTT TTCGAAGTTT
CTTACGGTGT TTTCTGCCAC GCCTGAAGTG CAGCAACGCT TTACGGCGGT GAAGGTGCAG
GCTTTGGTTT TGAAACCAGC AAAACAGACC GATAGGTTCG AACCCCAAAC GACTGATGTA
GCGAATGCAT CTTTGGCCTA CCCACTGATG GGTCCAATCA TCTCGGACAA AACTGACGGT
GTTCAGATTG AAGCTGTAGA CGATCGTCAT GTCAGGGTTA TTGATAAACG CGCTGGTCAT
AGCGATATCA AAGTCTTCAA CTTTTCTCGT CAAACATGCT GGGTGCTTGC AGGAATGGAA
GATTGGTCGA TAAGCGAGAA AGATCTCTCA GCAGCAGTCC AGCCAAAAAT GAACCGTAGT
GAGAGTCTTT GCTTCCAGCG CGGTAGAGCA TACGCGGGCC TGGGCGGTGT AGAGCAGTAT
CCATTGACCG CTGAATTCTT TGAGGCTGCA CTGGAAAACT ATGTGTGTGC AGCTGCGTCG
GGAGATCCTC AGGCAAGTTT GAACGCTGCG AGTCTCAGCC TTTCCGGGAT GGCACCACAG
CTGGAAACGG AAAAGGTCGA GGCGCTTTTC AAGGCGGCCT CTACTACGCT CGCCGATGGA
GCGGCAGGGT TGTCGAGTTT CTACTGTTAT GGCAACAACG TTGCAGCTGA TGGCCCTTGT
CAGCACCCCG AGCAAGCAGA AAAGGAGCTT GTTCGTGCAG TGTCCATGGG ATCTTCCGAT
GCGACTAATT ACTTGGGCTA CACCTTGGAA ACAGGTGAGC TAAGAACAAC GGACTTAGAC
AGAGCAATAG CTTGTTATCG TCTGGCTGCC AGTATGGGTA ATCAAACTGC CGCCGACAAT
CTGAAACGCC TGAGCAAGCA AGCTACCGAC GTTTCAACAG CTGGCCATTG CTATTAA
|
|---|
| Protein sequence | MNRVFKKNSV FAIIFAACSW GGFLDRAYAE ACPSEDFSKF LTVFSATPEV QQRFTAVKVQ
ALVLKPAKQT DRFEPQTTDV ANASLAYPLM GPIISDKTDG VQIEAVDDRH VRVIDKRAGH
SDIKVFNFSR QTCWVLAGME DWSISEKDLS AAVQPKMNRS ESLCFQRGRA YAGLGGVEQY
PLTAEFFEAA LENYVCAAAS GDPQASLNAA SLSLSGMAPQ LETEKVEALF KAASTTLADG
AAGLSSFYCY GNNVAADGPC QHPEQAEKEL VRAVSMGSSD ATNYLGYTLE TGELRTTDLD
RAIACYRLAA SMGNQTAADN LKRLSKQATD VSTAGHCY
|
|---|
| |