| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5395 |
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| Symbol | |
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| ID | 1187082 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 6125320 |
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| End bp | 6128232 |
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| Gene Length | 2913 bp |
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| Protein Length | 970 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637396712 |
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| Product | aminotransferase, class III |
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| Protein accession | NP_795122 |
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| Protein GI | 28872503 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0160] 4-aminobutyrate aminotransferase and related aminotransferases
[COG2334] Putative homoserine kinase type II (protein kinase fold) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGCTCG CCACGCTCAT CCGCCGCTCC AGTCTGCCGT GCCCCGAAGT GAGCGTGGAT
CAGGCGCTGC AACTGCTTGC GCAGCATTAC GGCCTGAGCG GCACGCTGAA AACGCTGGGT
AGCCAGCAAG ATCGTAATTT TTTGCTTGAA ACCGACAAGC GGCGTTACGT GCTGAAAATC
TGCCACGGGG CGTATTCGAC CCGCGAGTTA ATGGCCCAGC ACGCGGCATT GCAACACCTG
GCCAGCCACC GCGCAGTCAG TGTGCCCGGC GTGATACGCG CCAATGACAC CGAGCCGCTG
TTGTCCGTCG ATGTCGACGG GCAGGCGGTG CACGTACGCT TGCTGGAATT TATCGACGGG
CAGTCGCTGG GGCATGTCGG GCACCTGAGC CATGACATCG TAGTCGGGCT GGGCGAGTTG
TGCGCCCGCG TTGATCTGGC GCTGGCCGAT TTCGAGCATC CTGGCCTGGA GCGCATCCTG
CAATGGGACC CGCGCCATGC TCAGGCGCTG ATCAAGCACC TGTTGCCCGT CATCAAGGAC
GCCGACGCCC GTGCCTGCGT GATTGAAGCG GGCGAGCAGG CTCATCGTCG CCTGTTGCCG
TTGATCCCTT CACTGCCGAT ACAGGCGGTG CACCTGGATA TCACCGAGCA CAACGTGGTC
TGGCTGCGTG ATTCGCAGCG CCAGTGGCAA ATGCAGGGGC TGATCGACTT CGGCGATCTG
GTGAGCACCT GGCGAGTGGC TGACCTTTCG GTAACCTGCG CGGCGCTGTT GCACCATGCC
GAGGGCGATC CGTTGTACAT CCTGCCGGCC ATTCGCGCCT ACCACGCGCT CAATCCGTTG
AAGCGCGAAG AGTTACAGGC GCTCTGGCCG CTGATCGTGG CGCGTTCTGC GGTGCTGGTA
CTCAGCAGCG AACAGCAGGC CAGCGTCGAG CCAGGCAACG CTTACATTCA GGCCAACCTT
GCTGGCGAAT GGAACATCTT CGACGTCGCG ACTTCAGTGC CGATGGCCCT GATGGAAGCG
GCGATTCTGC AGGCGGCAGG GGTGGATCTC CCGTCTGTCG ATCAGCCCGT CTACCAGCCG
CTGTTGCCCG GTCTGCCGGG GCTCACGCCG ACAGTGGTTG ATCTGGGCGT GCTCAGTGAA
CACTTCGTTG CAGGCAACTG GGAGCAGGGC GGTATCGATG AATACCTGCT CTCGCAAGCG
GCCGGTGACG ATGGCCTGGC GGCCAGTCGT TTCGGCGAGT ATCGGCTGTC GCGCACCTTG
CCTGACTGCG CGAAAGAGCC CGAGACGTTC GCCTTGCACG TTGAACTGCA CGTGCCCGCC
GGCACCGCTG TGCATGCTCC CTTCAGCGGC ACTTTACGGC TGACGGCAGA TGCGGCATTG
CTGCTGGTCG GTGACGCAAT AAGCCTGAAG CTGTGGGGCG TTTTGCCGAA TGCTTCGTTG
GCGGATCACG TGTCAGCAGG CGCGTTGATC GGGCAGGGCG GCGGTTCGCT GTTGCTGCAA
CTGTGCACCG CGCCAGACCT CAGCCCGCCA CTGTTCACCA CGCCATCCTG GGCGGCCGCC
TGGCGCAGGT TCTGCCCATC GCCTTCAATG CTGCTCGGTT TTGACTGCGA CGCGCCGGCG
CTTGCAGACC CCGCGCAGTT GCTGGCGCGC CGTGATGCCA GCTTCGCCCG CTCGCAAAAA
CACTACTATC AGGCGCCGCC GCAGATCGAG CGCGGCTGGC GCAATCACCT GATCGACATG
CAGGGCCGTT CCTATCTGGA TATGCTCAAT AACGTCGCGG TCCTCGGCCA CGGCCACCCG
CGCATGGCTT ATGAAGCGGC GCGGCAGTGG TCGCTGCTCA ACACCAATTC GCGCTTTCAC
TATGCGGCGA TTGCCGAGTT TTCCGAGCGC CTGCTCAAAC TTGCGCCCGA CGGCATGGAC
CGGGTTTTTC TGGTCAACAG CGGCACCGAG GCCAACGATC TGGCGATCAG GCTGGCCTGG
GCCTACAGCG GCGGGCGCGA CATGCTCAGC GTGCTAGAGG CTTATCATGG CTGGTCAGTG
GCAACCGATG CCATTTCCAC GTCAATCGCC GACAATCCGC AGGCGCTCAG CACCCGTCCC
GACTGGGTGC ACCCGGTCAC TGCGCCCAAC ACTTATCGCG GGCCGTACCG TGGCGCAGAC
AGCGCGCCGG AGTACGTGCG CAGTGTCGAT CAGGTGCTGG CAGCGCTCGC CGAACAGCAG
CGCCAGGTGG CGGGTTTTAT CTGTGAGCCG GTGTATGGCA ATGCGGGCGG CATCTCGTTG
CCGGCGGGCT ATCTGCAGCA GGTGTATCAA AAGGTTCGCG CGGTGGGTGG CGTGTGCATT
GCAGATGAAG TGCAGGTGGG CTATGGCCGC CTGGGTCATT ACTTCTGGGG CTTTGAAGAG
CAGGGTGTGG TCCCGGACAT CATCAGCATG GCCAAGGGCA TGGGCAACGG CCACCCGCTG
GGCGCGGTCA TTACCCGTCG TGAGATTGCC GAAGCGCTGG AGGCTGAAGG CTACTTCTTC
TCGTCATCTG GCGGCAGCCC GGTCAGTTGC CGAATCGGCA TGGCGGTGCT GGAGGTCATG
GAGGAAGAAA AACTGTGGGA CAACGCGCGG ATTGTCGGCG ACCACTTCAA GGCACGCCTG
CAAGCACTGA CCGATAAACA TCCGCTGGTG GGCGCGGTGC ATGGCATGGG GTTTTATCTG
GGCGTTGAGT TGGTCCGCGA CCGCCAGACC CTGGAACCCG CCACAGAAGA AACCGCGCAA
CTCTGCGAGC GCTTGCGTGA GCTGGGCATC TTCATGCAGC CGACCGGCGA CCACCTGAAC
ATCCTGAAAA TCAAACCGCC GATGTGCACC ACTCGCCAGA GTGTGGATTT TTTCGTCGAT
AACGTGTCGA AGGTGCTGTA CGAACTGGAA TAG
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| Protein sequence | MPLATLIRRS SLPCPEVSVD QALQLLAQHY GLSGTLKTLG SQQDRNFLLE TDKRRYVLKI
CHGAYSTREL MAQHAALQHL ASHRAVSVPG VIRANDTEPL LSVDVDGQAV HVRLLEFIDG
QSLGHVGHLS HDIVVGLGEL CARVDLALAD FEHPGLERIL QWDPRHAQAL IKHLLPVIKD
ADARACVIEA GEQAHRRLLP LIPSLPIQAV HLDITEHNVV WLRDSQRQWQ MQGLIDFGDL
VSTWRVADLS VTCAALLHHA EGDPLYILPA IRAYHALNPL KREELQALWP LIVARSAVLV
LSSEQQASVE PGNAYIQANL AGEWNIFDVA TSVPMALMEA AILQAAGVDL PSVDQPVYQP
LLPGLPGLTP TVVDLGVLSE HFVAGNWEQG GIDEYLLSQA AGDDGLAASR FGEYRLSRTL
PDCAKEPETF ALHVELHVPA GTAVHAPFSG TLRLTADAAL LLVGDAISLK LWGVLPNASL
ADHVSAGALI GQGGGSLLLQ LCTAPDLSPP LFTTPSWAAA WRRFCPSPSM LLGFDCDAPA
LADPAQLLAR RDASFARSQK HYYQAPPQIE RGWRNHLIDM QGRSYLDMLN NVAVLGHGHP
RMAYEAARQW SLLNTNSRFH YAAIAEFSER LLKLAPDGMD RVFLVNSGTE ANDLAIRLAW
AYSGGRDMLS VLEAYHGWSV ATDAISTSIA DNPQALSTRP DWVHPVTAPN TYRGPYRGAD
SAPEYVRSVD QVLAALAEQQ RQVAGFICEP VYGNAGGISL PAGYLQQVYQ KVRAVGGVCI
ADEVQVGYGR LGHYFWGFEE QGVVPDIISM AKGMGNGHPL GAVITRREIA EALEAEGYFF
SSSGGSPVSC RIGMAVLEVM EEEKLWDNAR IVGDHFKARL QALTDKHPLV GAVHGMGFYL
GVELVRDRQT LEPATEETAQ LCERLRELGI FMQPTGDHLN ILKIKPPMCT TRQSVDFFVD
NVSKVLYELE
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