| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5394 |
|---|
| Symbol | |
|---|
| ID | 1187081 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 6124134 |
|---|
| End bp | 6125012 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637396711 |
|---|
| Product | carbon-nitrogen hydrolase family protein |
|---|
| Protein accession | NP_795121 |
|---|
| Protein GI | 28872502 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0388] Predicted amidohydrolase |
|---|
| TIGRFAM ID | [TIGR03381] N-carbamoylputrescine amidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGTA TCGTTTCTGT CGCTGCTACC CAGATGGCCT GTTCCTGGGA TCTGGAAGCC
AACATCGAAA CCGCTGAAAA GCTGGTGCGT GAAGCTGCCG CCAAGGGCGC ACAGATCATC
CTGATTCAGG AACTGTTCGA AACCCCGTAC TTCTGCCAGA AGCCGAACGC GGACTATCTG
CAGTTGGCGA CTACGCTGGA GTCCAACGTT GCGATCAAGC ATTTCCAGAA AATCGCCAAA
GAGCTGCAAG TCGTGCTGCC GATCAGCTTC TTTGAGTTGG CGGGGCGTGC GCGTTTCAAC
ACCATTGCGA TCATCGACGC AGACGGCACC AACCTGGGCA TCTACCGCAA GAGCCACATA
CCGGATGGCC CCGGCTACCA CGAAAAGTAC TACTTCAACC CAGGCGATAC CGGCTTCAAG
GTCTGGCAGA CCCGTTACGC GAAAATCGGC GTCGGCATCT GCTGGGACCA GTGGTTCCCG
GAATGCGCGC GCAGCATGGC GTTGCAGGGC GCAGAAATCC TGTTCTACCC GACCGCCATT
GGCAGCGAGC CGCATGACAA GACCATCAGC TCCCGCGACC ACTGGCAGCG TGTGCAACAA
GGCCATGCCG GCGCGAACCT GATGCCGCTG ATTGCCAGCA ACCGCATCGG CAACGAAGAG
CAGGACGGCT ACGACATCAC CTTCTATGGC TCGTCGTTCA TCGCCAACCA GTTCGGTGAG
AAAGTCGCCG AGCTCAATGA GACCGAAGAA GGCGTGCTGG TTCACAGCTT CGACCTGGAC
GAGCTGGAGC ACATTCGTAG CGCCTGGGGC ACGTTCCGTG ATCGCCGTCC GAACCTGTAC
GGCGCGGTCA AGACCCTCGA CGGTTCGCTG GAGTCCTGA
|
|---|
| Protein sequence | MSRIVSVAAT QMACSWDLEA NIETAEKLVR EAAAKGAQII LIQELFETPY FCQKPNADYL
QLATTLESNV AIKHFQKIAK ELQVVLPISF FELAGRARFN TIAIIDADGT NLGIYRKSHI
PDGPGYHEKY YFNPGDTGFK VWQTRYAKIG VGICWDQWFP ECARSMALQG AEILFYPTAI
GSEPHDKTIS SRDHWQRVQQ GHAGANLMPL IASNRIGNEE QDGYDITFYG SSFIANQFGE
KVAELNETEE GVLVHSFDLD ELEHIRSAWG TFRDRRPNLY GAVKTLDGSL ES
|
|---|
| |