| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5391 |
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| Symbol | |
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| ID | 1187078 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 6121092 |
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| End bp | 6122366 |
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| Gene Length | 1275 bp |
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| Protein Length | 424 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637396708 |
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| Product | outer membrane porin, OprD family |
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| Protein accession | NP_795118 |
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| Protein GI | 28872499 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTAACCA AACGTATGGG CATGCTCGCT TTGGGCATCA TCAGTGCCAG TCAGGCCATG
GCCGAAGGGC AGGCAGATTC AAAGGGTTTT GTTGAGGACA GCAGGCTGAC CGTCAACCTG
CGTAACGCCT ACATCAATCG CGATTATAAA AACGACCGGG AAGACAAGTC CGAATGGGGC
CAGGCTTTCA TGGGCACCTT CGCGTCCGGT TTCACTCAAG GCACGGTTGG CGTGGGCGTC
GATGCCTTTG CGCTGTACGG CATTCGCCTG GATGGCGGCA AGGGCCGCAG TGGCAACGGC
GGTATCGATT TCTTCAAGCA GGGCGACAGT GGCGCAGCGG CCGATGACCT GTCTCGGGCA
GGTGCAGCGG TGAAGGCGCG CTTCTCGAAG ACCGTCATCA AATACGGCGA CCAGATGCCG
CAATTGCCGG TGCTGAGTTA CGACAATTCC CGTCTGCTGC CAGAAAGCTA CACCGGCACC
ATGATCACCT CGAAAGAGAT CGACGGGCTT GAAGTGGTTG CAGGACGTTT CACCCAAGAG
GCCCGTAAAA GCGCCGAAGG TCGCGACAGC GGGGATCTGA AAAGCATCAA TGTCTACGGT
GCCAGCTACA AATTCACCGA TGAATTCAGC GCTGCGTTCT ACGCTTCCGA CAACGAAGAC
GTGCTCAAGA AGCAGTACGT CAACCTGAAC TACGTCTTTG CCCTGCCGCA AGACCAGTCG
CTGACCTTCG ACTTCAACGG CTACAAGACC AAGCTGGATA AAGACTTCAC CACCAGCGAT
GCGCGTGACA ACAAAATCTG GAGCCTGGCA GCGACCTGGG CCGTCGGCAT CCATTCCTTC
ACCCTGGCGC ACCAGCGCAG CACCGGTGAC ATGGGCTACG CCTACGGAGG CTATCGCAAC
GACGGTGGTT TTGGCGACGG CGGCAACACC ATCTACCTTG CCAACTCCTA CTGGTCCGAC
TTCAACGGCA AGGACGAGCG CTCGTGGCAA GCAGCCTACG GCGTGGACTT GTCCAGCCTC
GTCATGCCTG GCCTGAGCTA CAAGGCTGCC TACGTGCGCG GCGACAACAT CGACGATGGC
ACCGCTGGCA GTGGCGACGG CACCGAGCGC GAGATCTTCA GCCAACTGAC CTACGTGGTT
CAAAGCGGCC CGGCCAAAGA CCTTTCGATT CGCCTGCGCA ACTCGTTCCT GCGCGTCTCC
GATGATGCAC AGGCCTACAA CAGCGAAGGC AACGAAACGC GCATTTTCGT TGATTATCCG
ATTAACGTTT TTTGA
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| Protein sequence | MLTKRMGMLA LGIISASQAM AEGQADSKGF VEDSRLTVNL RNAYINRDYK NDREDKSEWG
QAFMGTFASG FTQGTVGVGV DAFALYGIRL DGGKGRSGNG GIDFFKQGDS GAAADDLSRA
GAAVKARFSK TVIKYGDQMP QLPVLSYDNS RLLPESYTGT MITSKEIDGL EVVAGRFTQE
ARKSAEGRDS GDLKSINVYG ASYKFTDEFS AAFYASDNED VLKKQYVNLN YVFALPQDQS
LTFDFNGYKT KLDKDFTTSD ARDNKIWSLA ATWAVGIHSF TLAHQRSTGD MGYAYGGYRN
DGGFGDGGNT IYLANSYWSD FNGKDERSWQ AAYGVDLSSL VMPGLSYKAA YVRGDNIDDG
TAGSGDGTER EIFSQLTYVV QSGPAKDLSI RLRNSFLRVS DDAQAYNSEG NETRIFVDYP
INVF
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