Gene PSPTO_5380 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_5380 
Symbol 
ID1187067 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp6112219 
End bp6113838 
Gene Length1620 bp 
Protein Length539 aa 
Translation table11 
GC content64% 
IMG OID637396697 
Productallophanate hydrolase, putative 
Protein accessionNP_795107 
Protein GI28872488 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1984] Allophanate hydrolase subunit 2
[COG2049] Allophanate hydrolase subunit 1 
TIGRFAM ID[TIGR00370] conserved hypothetical protein TIGR00370
[TIGR00724] biotin-dependent carboxylase uncharacterized domain 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCGCTTTC TACCGGTCAA CCTGGACGTC CTGCTCGTCG AATTGAAAGA TCTGGACGAA 
ACCCTGGCCT TGTTCGACGC CCTGACGGCG GAGCCAATTG CGGGTGTGGA GGAGATCGTT
CCTGCCGCAC GCACGCTATT GATCCAGTTC CGCCCCAGCA CCATCGAGCG TCAGGCGCTG
GTCAACCGCA TAGCTGGCCA GGACCTCAGC CAGCGCCGTG AGGGCGAACA CCGTCGGGTG
GAAATCCCGG TGCATTACAA CGGCGAAGAC CTCGACGAAG TCGCAACGCT GCTGAATATC
AGCCGCGCAG AGGTCATCCA GCGTCACACC GCTCATGACT ACAGCGTGGC GTTCTGCGGT
TTCGCGCCGG GCTTCGCGTA CCTGACGGGC GGCGCCGGGT TCCAGGTGCC TCGTCGGCAA
ACGCCGCGCA CTCGCATCCC TGCCGGTGCG GTGGCGTTGG CGGGCGACTT CAGCGGTGTC
TATCCCAAAG CCAGCCCTGG TGGGTGGCAG ATCATCGGCG TGACGCCGTT GCAGATGTGG
GACCTGAACC GCGCCGAGCC TGCCCTGCTA CGCCCTGGCT ATAAAGTACG CTTCACCGAC
GCCGGTCCAT TGCCTGCCGA TGGCCTGCCA GTGCCTTCGG CGCCAGCACG CAACGACGCC
ACAACAGCAA CGTATCTGGA GATCACCAGC CCAGGCCTGC ACAGCGTATT GCAGGACATG
GGCCGCCCCG GCCAGACCGG CCAGGGCGTA TCCCGCTCCG GCGCGCTGGA CCTGGGTGCT
CTGCGCTCGG CCAACCGCAC CGTCGGCAAC CCTTCGGACA TGGCCTGCGT GGAATCGGTA
CTTGGAGGCC TGAGTTTCAG TTGCCATGGC AGTGCTGTGA TCGCCATCAC CGGCGCACAC
ACCCCAGTCA CCATCACCAG CGCCAGCGGC CTGCAATGGC AAGCCAGCAA CTATCAGCCC
ATCGAGCTGG AAACGGGCGA CCGCGTGAGC CTGGGCTCAC CCAAGGCCGG CTTGCGCAGT
TATCTGGCCA TCCGTGGGGG TTTCGACGTC ACGCCGGTGC TCGGCAGCCT GTCCACCGAT
ACCCTGGCGC AGCTCGGTCC TGAAGCGTTG GCAACTGGCG ACCGACTGGG CTTTACCGCG
CCGGTCAACG GCACCAGCGT ATCCCTGAAC GAAGCGCCAG CCTTTGAGCT GCCGACCACC
GCCAACATTG TCACCCTCGA TGTGGTGATG GGGCCGCGCA CCGACTGGTT TACCGAAAAC
GCCATCCAGC GTCTGAGCAG CCAGCTGTGG CGCGTCACCC CGCAATCCAA CCGGGTCGGC
ATCCGTCTGG CCGGTGATAC ACCACTGGAA CGCAGTAATC ATCAGGAGTT GCCCAGCGAA
GGCACTTCTG TTGGCGCGAT CCAGGTTCCA GCCAGCGGCC AACCGGTGCT GTTCCTGGCC
GACCATCCAC TGACCGGTGG TTATCCGGTG ATTGCCTCGG TGGCCAGCCA CCATCTGGAT
TTGGCAGGAC AGATACCGGT CAATGCACAG ATTCGCTTCA ACCCGCTGGG GGCGTTCGAA
GAAATGCAGC CCAGCACCGA AGCCTCTTTT TCAACTGCCG ATGCGAAGAA CAATTCATGA
 
Protein sequence
MRFLPVNLDV LLVELKDLDE TLALFDALTA EPIAGVEEIV PAARTLLIQF RPSTIERQAL 
VNRIAGQDLS QRREGEHRRV EIPVHYNGED LDEVATLLNI SRAEVIQRHT AHDYSVAFCG
FAPGFAYLTG GAGFQVPRRQ TPRTRIPAGA VALAGDFSGV YPKASPGGWQ IIGVTPLQMW
DLNRAEPALL RPGYKVRFTD AGPLPADGLP VPSAPARNDA TTATYLEITS PGLHSVLQDM
GRPGQTGQGV SRSGALDLGA LRSANRTVGN PSDMACVESV LGGLSFSCHG SAVIAITGAH
TPVTITSASG LQWQASNYQP IELETGDRVS LGSPKAGLRS YLAIRGGFDV TPVLGSLSTD
TLAQLGPEAL ATGDRLGFTA PVNGTSVSLN EAPAFELPTT ANIVTLDVVM GPRTDWFTEN
AIQRLSSQLW RVTPQSNRVG IRLAGDTPLE RSNHQELPSE GTSVGAIQVP ASGQPVLFLA
DHPLTGGYPV IASVASHHLD LAGQIPVNAQ IRFNPLGAFE EMQPSTEASF STADAKNNS