Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5380 |
Symbol | |
ID | 1187067 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 6112219 |
End bp | 6113838 |
Gene Length | 1620 bp |
Protein Length | 539 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637396697 |
Product | allophanate hydrolase, putative |
Protein accession | NP_795107 |
Protein GI | 28872488 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1984] Allophanate hydrolase subunit 2 [COG2049] Allophanate hydrolase subunit 1 |
TIGRFAM ID | [TIGR00370] conserved hypothetical protein TIGR00370 [TIGR00724] biotin-dependent carboxylase uncharacterized domain |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCGCTTTC TACCGGTCAA CCTGGACGTC CTGCTCGTCG AATTGAAAGA TCTGGACGAA ACCCTGGCCT TGTTCGACGC CCTGACGGCG GAGCCAATTG CGGGTGTGGA GGAGATCGTT CCTGCCGCAC GCACGCTATT GATCCAGTTC CGCCCCAGCA CCATCGAGCG TCAGGCGCTG GTCAACCGCA TAGCTGGCCA GGACCTCAGC CAGCGCCGTG AGGGCGAACA CCGTCGGGTG GAAATCCCGG TGCATTACAA CGGCGAAGAC CTCGACGAAG TCGCAACGCT GCTGAATATC AGCCGCGCAG AGGTCATCCA GCGTCACACC GCTCATGACT ACAGCGTGGC GTTCTGCGGT TTCGCGCCGG GCTTCGCGTA CCTGACGGGC GGCGCCGGGT TCCAGGTGCC TCGTCGGCAA ACGCCGCGCA CTCGCATCCC TGCCGGTGCG GTGGCGTTGG CGGGCGACTT CAGCGGTGTC TATCCCAAAG CCAGCCCTGG TGGGTGGCAG ATCATCGGCG TGACGCCGTT GCAGATGTGG GACCTGAACC GCGCCGAGCC TGCCCTGCTA CGCCCTGGCT ATAAAGTACG CTTCACCGAC GCCGGTCCAT TGCCTGCCGA TGGCCTGCCA GTGCCTTCGG CGCCAGCACG CAACGACGCC ACAACAGCAA CGTATCTGGA GATCACCAGC CCAGGCCTGC ACAGCGTATT GCAGGACATG GGCCGCCCCG GCCAGACCGG CCAGGGCGTA TCCCGCTCCG GCGCGCTGGA CCTGGGTGCT CTGCGCTCGG CCAACCGCAC CGTCGGCAAC CCTTCGGACA TGGCCTGCGT GGAATCGGTA CTTGGAGGCC TGAGTTTCAG TTGCCATGGC AGTGCTGTGA TCGCCATCAC CGGCGCACAC ACCCCAGTCA CCATCACCAG CGCCAGCGGC CTGCAATGGC AAGCCAGCAA CTATCAGCCC ATCGAGCTGG AAACGGGCGA CCGCGTGAGC CTGGGCTCAC CCAAGGCCGG CTTGCGCAGT TATCTGGCCA TCCGTGGGGG TTTCGACGTC ACGCCGGTGC TCGGCAGCCT GTCCACCGAT ACCCTGGCGC AGCTCGGTCC TGAAGCGTTG GCAACTGGCG ACCGACTGGG CTTTACCGCG CCGGTCAACG GCACCAGCGT ATCCCTGAAC GAAGCGCCAG CCTTTGAGCT GCCGACCACC GCCAACATTG TCACCCTCGA TGTGGTGATG GGGCCGCGCA CCGACTGGTT TACCGAAAAC GCCATCCAGC GTCTGAGCAG CCAGCTGTGG CGCGTCACCC CGCAATCCAA CCGGGTCGGC ATCCGTCTGG CCGGTGATAC ACCACTGGAA CGCAGTAATC ATCAGGAGTT GCCCAGCGAA GGCACTTCTG TTGGCGCGAT CCAGGTTCCA GCCAGCGGCC AACCGGTGCT GTTCCTGGCC GACCATCCAC TGACCGGTGG TTATCCGGTG ATTGCCTCGG TGGCCAGCCA CCATCTGGAT TTGGCAGGAC AGATACCGGT CAATGCACAG ATTCGCTTCA ACCCGCTGGG GGCGTTCGAA GAAATGCAGC CCAGCACCGA AGCCTCTTTT TCAACTGCCG ATGCGAAGAA CAATTCATGA
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Protein sequence | MRFLPVNLDV LLVELKDLDE TLALFDALTA EPIAGVEEIV PAARTLLIQF RPSTIERQAL VNRIAGQDLS QRREGEHRRV EIPVHYNGED LDEVATLLNI SRAEVIQRHT AHDYSVAFCG FAPGFAYLTG GAGFQVPRRQ TPRTRIPAGA VALAGDFSGV YPKASPGGWQ IIGVTPLQMW DLNRAEPALL RPGYKVRFTD AGPLPADGLP VPSAPARNDA TTATYLEITS PGLHSVLQDM GRPGQTGQGV SRSGALDLGA LRSANRTVGN PSDMACVESV LGGLSFSCHG SAVIAITGAH TPVTITSASG LQWQASNYQP IELETGDRVS LGSPKAGLRS YLAIRGGFDV TPVLGSLSTD TLAQLGPEAL ATGDRLGFTA PVNGTSVSLN EAPAFELPTT ANIVTLDVVM GPRTDWFTEN AIQRLSSQLW RVTPQSNRVG IRLAGDTPLE RSNHQELPSE GTSVGAIQVP ASGQPVLFLA DHPLTGGYPV IASVASHHLD LAGQIPVNAQ IRFNPLGAFE EMQPSTEASF STADAKNNS
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