Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5378 |
Symbol | |
ID | 1187065 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 6110636 |
End bp | 6111406 |
Gene Length | 771 bp |
Protein Length | 256 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637396695 |
Product | LamB/YcsF family protein |
Protein accession | NP_795105 |
Protein GI | 28872486 |
COG category | [R] General function prediction only |
COG ID | [COG1540] Uncharacterized proteins, homologs of lactam utilization protein B |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTGCGA TTGATCTAAA TAGCGACCTG GGTGAAAGCT TCGGCGCCTG GAGCATGGGC GACGATGCCG CGATGCTCGA CATCGTAACC AGCGCCAATG TCGCCTGTGG TTTTCACGCC GGCGACCCGG CGGGCATCCT GCGGACACTG AAAGCCGCTG CCGCAAAGAA CGTCACGATT GGCGCTCACG TGTCCTACCC GGACAAGGTT GGCTTTGGCC GCCGTAACAT GGACGTGGCC AGCGACGAAC TGACCGCCGA CGTGATTTAT CAGATCGGTT CGCTGCAAGG CCTGGCCAAG GCTGCTGGCA CCTCGGTGCG CTACGTCAAG CCTCACGGGG CCTTGTACAA CACCATTGCG CACGACCGCA GACAGGCGAT GGCGGTGATT GAGGCGATCC GCGCCATTGA TCCTGCGCTG GTGCTCGTCG CTCTGGCGGG CTCCACCCTG ATTGAGCTGG CCCGTAGCGA AGGTTTGCAG TGCATCGCCG AGGCCTTCGC TGATCGTGCG TATACGCCAC AAGGCACTCT GGTTTCGCGG CGCGAGCCCG GGGCTGTGCT TCACGACCCG GAGCTGGTGG CCCAGCGCAT GTTGCGTCTG GTTCAGTCAG GCTCCATCGA AGCCATTGAT GGCAGCCTGG TCAGGATAGA GGCCGACTCG ATTTGTGTGC ATGGCGACAG CCCCGCCGCC GTAGAGATGG CCCGCGAGCT GCGCCGCGTA CTGGAACAAG CCAGTACATC TTTGCAGCCC TTTGCCGGAA AACGCTCATG A
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Protein sequence | MRAIDLNSDL GESFGAWSMG DDAAMLDIVT SANVACGFHA GDPAGILRTL KAAAAKNVTI GAHVSYPDKV GFGRRNMDVA SDELTADVIY QIGSLQGLAK AAGTSVRYVK PHGALYNTIA HDRRQAMAVI EAIRAIDPAL VLVALAGSTL IELARSEGLQ CIAEAFADRA YTPQGTLVSR REPGAVLHDP ELVAQRMLRL VQSGSIEAID GSLVRIEADS ICVHGDSPAA VEMARELRRV LEQASTSLQP FAGKRS
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