Gene PSPTO_5378 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_5378 
Symbol 
ID1187065 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp6110636 
End bp6111406 
Gene Length771 bp 
Protein Length256 aa 
Translation table11 
GC content62% 
IMG OID637396695 
ProductLamB/YcsF family protein 
Protein accessionNP_795105 
Protein GI28872486 
COG category[R] General function prediction only 
COG ID[COG1540] Uncharacterized proteins, homologs of lactam utilization protein B 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGTGCGA TTGATCTAAA TAGCGACCTG GGTGAAAGCT TCGGCGCCTG GAGCATGGGC 
GACGATGCCG CGATGCTCGA CATCGTAACC AGCGCCAATG TCGCCTGTGG TTTTCACGCC
GGCGACCCGG CGGGCATCCT GCGGACACTG AAAGCCGCTG CCGCAAAGAA CGTCACGATT
GGCGCTCACG TGTCCTACCC GGACAAGGTT GGCTTTGGCC GCCGTAACAT GGACGTGGCC
AGCGACGAAC TGACCGCCGA CGTGATTTAT CAGATCGGTT CGCTGCAAGG CCTGGCCAAG
GCTGCTGGCA CCTCGGTGCG CTACGTCAAG CCTCACGGGG CCTTGTACAA CACCATTGCG
CACGACCGCA GACAGGCGAT GGCGGTGATT GAGGCGATCC GCGCCATTGA TCCTGCGCTG
GTGCTCGTCG CTCTGGCGGG CTCCACCCTG ATTGAGCTGG CCCGTAGCGA AGGTTTGCAG
TGCATCGCCG AGGCCTTCGC TGATCGTGCG TATACGCCAC AAGGCACTCT GGTTTCGCGG
CGCGAGCCCG GGGCTGTGCT TCACGACCCG GAGCTGGTGG CCCAGCGCAT GTTGCGTCTG
GTTCAGTCAG GCTCCATCGA AGCCATTGAT GGCAGCCTGG TCAGGATAGA GGCCGACTCG
ATTTGTGTGC ATGGCGACAG CCCCGCCGCC GTAGAGATGG CCCGCGAGCT GCGCCGCGTA
CTGGAACAAG CCAGTACATC TTTGCAGCCC TTTGCCGGAA AACGCTCATG A
 
Protein sequence
MRAIDLNSDL GESFGAWSMG DDAAMLDIVT SANVACGFHA GDPAGILRTL KAAAAKNVTI 
GAHVSYPDKV GFGRRNMDVA SDELTADVIY QIGSLQGLAK AAGTSVRYVK PHGALYNTIA
HDRRQAMAVI EAIRAIDPAL VLVALAGSTL IELARSEGLQ CIAEAFADRA YTPQGTLVSR
REPGAVLHDP ELVAQRMLRL VQSGSIEAID GSLVRIEADS ICVHGDSPAA VEMARELRRV
LEQASTSLQP FAGKRS