Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5375 |
Symbol | |
ID | 1187062 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 6107952 |
End bp | 6108296 |
Gene Length | 345 bp |
Protein Length | 114 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637396692 |
Product | hypothetical protein |
Protein accession | NP_795102 |
Protein GI | 28872483 |
COG category | [K] Transcription |
COG ID | [COG3636] Predicted transcriptional regulator |
TIGRFAM ID | [TIGR02684] probable addiction module antidote protein |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00339875 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCACTC ATACGCGATC CCATGACGAA AGCGTTCTCG ACATGCTTCG TGAAGACGAA GCATTTGCCA TCGAATATCT GTCTGTTGCG CTGGAGGAAA TCGACGAGGA CGGTGGCGAA GACGCTTTTC TTATCGCCAT CCGTCGCTTG ATCGAGGCGA GAGGCGGTAT GGGAAACCTC TCAAAGAACA CAGGCCTGGC CCGACCCAAC CTTTACAGAT CTATTGCAGC TGGTGGCGAC CCCAAGCTCT CCACCATCCT GAAGGTGCTC CAGGCACTGG GCGTGGGAAT GTCAAAGGTC GTTTCGCACA GGCCGGACGT GGGCGGCCAA CGCACCGACC CGTGA
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Protein sequence | MTTHTRSHDE SVLDMLREDE AFAIEYLSVA LEEIDEDGGE DAFLIAIRRL IEARGGMGNL SKNTGLARPN LYRSIAAGGD PKLSTILKVL QALGVGMSKV VSHRPDVGGQ RTDP
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