Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5329 |
Symbol | |
ID | 1187014 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 6057112 |
End bp | 6058449 |
Gene Length | 1338 bp |
Protein Length | 445 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637396648 |
Product | carboxyl-terminal protease family protein |
Protein accession | NP_795060 |
Protein GI | 28872441 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0793] Periplasmic protease |
TIGRFAM ID | [TIGR00225] C-terminal peptidase (prc) |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGCATT TGTCCCGCCT CACCTCGCTG GCCCTGGCAA TTGCCATCGT TATCGGCGCG CCCCTGGCGC AAGCTGCCGA AAAAACCGCG CCAGCCACGC CTGCAGCAGT CGCACCCGCC AAACCCAATG CCAACGCCAA GCCGCCGCTG CCGCTTGACG AGTTGCGGAC CTTTGCCGAG GTCATGGATC GGGTCAAGGC TGCCTACGTC GAGCCGGTGG ACGACAAAAC GCTGCTGGAA AACGCTATCA AGGGCATGCT CAGCAACCTT GATCCGCACT CGGCCTACCT CGGCCCGGAA GATTTCCAGG AGTTGCAGGA AAGCACCAGC GGCGAATTCG GTGGTCTGGG CATCGAAGTA GGCGTCGAAG ACGGCCTGGT CAAGGTGGTT TCGCCCATCG ACGATACCCC CGCCTCCAAG GCTGGCATTG AGGCAGGCGA CCTGATCGTG AAGATCAATG GCACGCCGAC CCAGGGCCAG AACATGCAGG AAGCAGTCGA CAAGATGCGC GGCAAGATCG GCGAAAAAAT AACGCTGACA TTGGTGCGCG ATGGCGGCAC GCCGTTTGAC GTAACGCTGG CGCGGGCGAC CATTCAGGTC AAGAGCGTCA AGGCGCAGAT GCTGGAAAAC GGCTACGGCT ACATCCGCAT CACCCAGTTC CAGGTCAAGA CCGGCGACGA GGTCGGCAAG GCGCTGGCCA AGTTCCGCAA GGACAACGGC AAGAAGATGA GCGGCCTGAT TCTCGACCTG CGCAACAACC CTGGCGGCGT GCTGCAATCG GCAGTGCAGG TGGCGGACCA CTTCCTCACC AAAGGCCTGA TCGTCTACAC CAAAGGCCGC ATCGCCAATT CCGAACTGCG CTTCTCGGCC GACCCGGCAG ACGCCAGCGA AGGCGTGCCA CTGGTGGTGC TGATCAACGG CGGCAGCGCC TCGGCATCTG AAATTGTCGC CGGCGCCCTG CAAGACCAGA AACGCGGCAT CCTGATGGGT ACCGATACCT TCGGCAAAGG CTCGGTGCAA ACCGTTCTGC CGCTGAACAA CGATCGCGCA CTGAAGATCA CTACGGCGCT GTATTACACG CCGAACGGTC GCTCTATTCA GGCGCAGGGT ATCAACCCGG ACATCGTGGT ACGTCGGGCC AAGGTCACCA GCGAAGCGGA CGGCGAGAAC TACAAGGAAG CCGACCTGAT GGGTCACCTG GGCAACGGCA ATGGCGGCGC CGACAAACCG ACCGTCAAAG GCAGCGCAGC GGCCAAGGCG CGTCCGCAGG ATGACGACTT CCAGCTCAGT CAGGCGCTTA GCCTGCTGAA GGGGCTGAGT ATCACCCGCG GTAACTGA
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Protein sequence | MLHLSRLTSL ALAIAIVIGA PLAQAAEKTA PATPAAVAPA KPNANAKPPL PLDELRTFAE VMDRVKAAYV EPVDDKTLLE NAIKGMLSNL DPHSAYLGPE DFQELQESTS GEFGGLGIEV GVEDGLVKVV SPIDDTPASK AGIEAGDLIV KINGTPTQGQ NMQEAVDKMR GKIGEKITLT LVRDGGTPFD VTLARATIQV KSVKAQMLEN GYGYIRITQF QVKTGDEVGK ALAKFRKDNG KKMSGLILDL RNNPGGVLQS AVQVADHFLT KGLIVYTKGR IANSELRFSA DPADASEGVP LVVLINGGSA SASEIVAGAL QDQKRGILMG TDTFGKGSVQ TVLPLNNDRA LKITTALYYT PNGRSIQAQG INPDIVVRRA KVTSEADGEN YKEADLMGHL GNGNGGADKP TVKGSAAAKA RPQDDDFQLS QALSLLKGLS ITRGN
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