Gene PSPTO_5311 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_5311 
Symbol 
ID1186996 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand+ 
Start bp6040789 
End bp6041421 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content62% 
IMG OID637396630 
Producttranscriptional regulator, TetR family 
Protein accessionNP_795042 
Protein GI28872423 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACACGCG CCGCCACTCC CCGCAAACCG CAAGCACGCA GCCAGGCCAG GATCGATTCG 
ATTCTCGACG CCGCGCGCAC ATTGCTTGCC GAACAAGGGG TGGCCAGCCT GTCGATCTAC 
AGCGTGGCTG AACGCGCCGG CATTCCGCCT TCGTCGGTGT ATCACTTCTT CGCCAGCGTT 
CCGGCGCTAC TCGAAGCACT GACCGCCGAC ATCCACGCCG CCTTCCGCGC ATCGCTGCAG 
GCGCCCATCG ATCACGATCA GCTCACCACC TGGCGCGACC TGTCACGCAT CGTCGAACTG 
CGCATGCTCG CCATCTACAA CGCCGACGCC GCCGCCCGGC AGTTGATCCT CGCCCAGCAC 
GGCCTGACCG AAATCAATCA GGCCGACCGC CAGCACGACA TTGAACTGGG GCACTTGATG 
CTTGAGGTCT TTGATCGCCA CTTCCAGCTG CCTGCGCTGC CGGATGACGT GGACGTATTT 
GCGCTGGCGA TGGAACTGGG GGATCGGGTG TATGCGCGGT CGGTGCAGTT GCATGACGAG 
ATCACACCGC GCATGGCTGA GGAAGGCATG CGGGTGTTTG ATGCTTATTT GGGGTTGTAT 
TTGCCGGTGT TTTTGGGGAA GAGGGCTGTT TGA
 
Protein sequence
MTRAATPRKP QARSQARIDS ILDAARTLLA EQGVASLSIY SVAERAGIPP SSVYHFFASV 
PALLEALTAD IHAAFRASLQ APIDHDQLTT WRDLSRIVEL RMLAIYNADA AARQLILAQH 
GLTEINQADR QHDIELGHLM LEVFDRHFQL PALPDDVDVF ALAMELGDRV YARSVQLHDE 
ITPRMAEEGM RVFDAYLGLY LPVFLGKRAV