| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5300 |
|---|
| Symbol | |
|---|
| ID | 1186985 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 6025145 |
|---|
| End bp | 6027532 |
|---|
| Gene Length | 2388 bp |
|---|
| Protein Length | 795 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637396619 |
|---|
| Product | penicillin amidase family protein |
|---|
| Protein accession | NP_795031 |
|---|
| Protein GI | 28872412 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2366] Protein related to penicillin acylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGCA GCCTTGTCAT TCTAGCCATT ATTATTGCCA TCATCGCCGG CGGCGCAGGC
TGGTACGTGA ACAGCAAGCA GCCGGTCCGC GATGGCGAGA TCGCCATGAG CCGTCTTCAA
GCGCCCGTCA CCCTGCGTTA CGACGAGCGC GGCGTACCGC ACATACGGGC TGAAAACGAA
GCCGATCTGT ACCGTGCGCT GGGTTACGCC CATGCCCAGG ACCGGCTGTT CCAGATGGAA
ATGCTGCGTC GTCTGGCGCG TGGCGAGCTG GCCGAAATAC TCGGGCCGAA TCTGCTCGAG
ACCGACAAAC TGTTTCGCAC CCTGCGCATC CGCGAGCATG CTGACGCATA CGTCGCACAC
CAGGACAAGA CCACTGCGAC CTGGAAAGCG CTGGAAGCCT ACATCGACGG CATCAATCAG
TATCAGGACA CCCACGCAAG GCCGATGGAG TTTGACGTGC TGGGCATCCC CAGGCGGCGC
TTCACTGCCG AAGACACGCT CAGCATCGGC GGCTATCTGG CCTACAGTTT TGCCGCCGCG
TTCCGCACCG AGCCACTGCT GACCTACGTG CGCGACCAGC TTGGCCCGCA GTATTTGAAA
GTGTTCGATC TGGACTGGCA CCCGGACGGT ATGCTGGACG CAAAACCGGC ACTGGCCAGC
GCCGACTGGA AAGGCCTGGC TGAACTGGCA CAGTTGAGCC ACAAGGCGCT GGAAGACGCA
GGCCTGCCGC AATTCGAGGG CAGCAACGCC TGGGCGATTT CCGGCAGCCG CACGCAAAGC
GGTAAACCTA TTCTTGCGGG CGATCCGCAC ATTCGCTTCT CGGTGCCCTC GGTATGGTAC
GAGGCGCAGC TGTCTGCGCC AGGCTTTGAG CTGTACGGTC ACTTTCCGGC GCTCAACCCG
TTCGCGTTTC TGGGCCACAA CATGGATTTC GGCTGGAGCC TGACCATGTT TCAGAACGAT
GACGTTGACC TGATTGCCGA AAAGACCAAC CCCGACAACC CCAATCAGGT CTGGTATCAC
GGCCAATGGG TGGACATGAA GCGTACCGAG CAGCAGATCG CGGTCAAAGG TCAGGCCCCG
GTCACGCTGA CCCTGATTGA GTCGCCGCAC GGCCCTATCG TCAATAACGT GATGGGCAAG
AATGCCGGTC AGACGCCGAT TGCAATGTGG TGGTCATTTC TGGTGTCCGC CAACCCCGTG
CTTGATGGTT TCTACGATGC CAATCGCGCC GACACGCTGG ACAAGATGCG CAGCGCCGCC
GAGAAGATCC AGTCGCCGGG CCTTAATATC GTCTGGGCCA ACGCCAAGGG CGACATTGGC
TGGTGGGCAG CGGCGCAACT GCCGATCCGC CCGGAAGGCG TCAACCCGGG TTTCATTCTG
GATGGCAGCA CCGCGCAGGC CGATAAACTG GGTTTCTACC CGTTCAGCGC CAACCCGCAC
GAAGAAAACC CTGCGCGTGG CTACATCGTG TCAGCCAACT TCCAGCCACT GTCGCCGACC
GGCATGCAGA TTCCGGGGTA TTACAACCCG GCTGAGCGCG GCCAGGAACT CAACCGGCAA
CTGAGTGATT CCAGCATCAA GTGGGACCTG GCGGCCAGCA AGGCCTTGCA GTTGAGCACA
CAGACCGATT ACGCCCCGAG CATTCTCAGG CCTCTGATTC CGGTGCTGCG CAGCGCGATC
AGCGACCCGG ACGAACTCGC GCTGGTCGAG CGGCTGGCCA GCTGGAAAGG TGATTACCCG
GTTGATTCGG TGGGTGCCAC GCTGTTCAAC CAGTTCCTCT TCGACCTGAC TGAAGAGACT
TTCCACGACG AACTGGACGA TGCGCTGTTT GAAACCTTGC TGTCGACCCG CGCACTGGAC
TCCGCCTTGC CACGCCTGGC CGCCGATGCC GATTCGCCCT GGTGGAACAA TCGCAATTCG
CCCCACGAAG AAAGCCGCGC CAACACCGTC AAGGTGGCCT GGCGGGCCAG CGTTTCGCAC
TTGCGATCGC TGTACGGCAC CAATCCGGAC GAATGGCTCT GGGGCAAGGC TCACACTTTG
ACCCAAGGTC ATCCGCTGGG ATCACAGAAG CCGCTGGACA GTATTTTCAA CGTCGGCCCG
TATGCTGCGC CGGGCACTCA CGAAGTACCG AACAACCTGT CCTCCAGCAT CCGCCCTGCC
CCGTGGCCCG TCGGCTACGG CCCCTCGACC CGCCGCCTCA TAGACTTCGC CGACCCGGCC
CACAGCCTGG GCATCAACCC GGTAGGCCAG AGCGGTGTAC CGTTCGACAA GCACTATTCG
GATCAGGCCA AGGCGTTTGT GAACGGCGAG TACGTGCCGC AGCGCTTTAG TGAGGAAGAT
GTGGCAGCGC ATACCGAAGG CGTTTTGCGG TTGGTGCCGG GGGAGTAG
|
|---|
| Protein sequence | MKRSLVILAI IIAIIAGGAG WYVNSKQPVR DGEIAMSRLQ APVTLRYDER GVPHIRAENE
ADLYRALGYA HAQDRLFQME MLRRLARGEL AEILGPNLLE TDKLFRTLRI REHADAYVAH
QDKTTATWKA LEAYIDGINQ YQDTHARPME FDVLGIPRRR FTAEDTLSIG GYLAYSFAAA
FRTEPLLTYV RDQLGPQYLK VFDLDWHPDG MLDAKPALAS ADWKGLAELA QLSHKALEDA
GLPQFEGSNA WAISGSRTQS GKPILAGDPH IRFSVPSVWY EAQLSAPGFE LYGHFPALNP
FAFLGHNMDF GWSLTMFQND DVDLIAEKTN PDNPNQVWYH GQWVDMKRTE QQIAVKGQAP
VTLTLIESPH GPIVNNVMGK NAGQTPIAMW WSFLVSANPV LDGFYDANRA DTLDKMRSAA
EKIQSPGLNI VWANAKGDIG WWAAAQLPIR PEGVNPGFIL DGSTAQADKL GFYPFSANPH
EENPARGYIV SANFQPLSPT GMQIPGYYNP AERGQELNRQ LSDSSIKWDL AASKALQLST
QTDYAPSILR PLIPVLRSAI SDPDELALVE RLASWKGDYP VDSVGATLFN QFLFDLTEET
FHDELDDALF ETLLSTRALD SALPRLAADA DSPWWNNRNS PHEESRANTV KVAWRASVSH
LRSLYGTNPD EWLWGKAHTL TQGHPLGSQK PLDSIFNVGP YAAPGTHEVP NNLSSSIRPA
PWPVGYGPST RRLIDFADPA HSLGINPVGQ SGVPFDKHYS DQAKAFVNGE YVPQRFSEED
VAAHTEGVLR LVPGE
|
|---|
| |