| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5293 |
|---|
| Symbol | |
|---|
| ID | 1186978 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 6018624 |
|---|
| End bp | 6020018 |
|---|
| Gene Length | 1395 bp |
|---|
| Protein Length | 464 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637396612 |
|---|
| Product | oxidoreductase, FAD-binding protein |
|---|
| Protein accession | NP_795024 |
|---|
| Protein GI | 28872405 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCATC CCGCTTTGAT TGATGAGCTG CAAGCCCTGG CTGACCCCGG CAAGGTGCTG
ACTGATGCCG GTTCTCTGGA GACCTACGGC AAGGACTGGA CCAGGCAGTT CACCCCCGCG
CCGCTGGCTA TCGTGTTTCC CAAGACCACC GAGCAGGTTC AGGCCATTGT GCGCTGGGCC
AATGAGCGTC TGGTCGCGCT GGTGCCGTCT GGCGGGCGCA CCGGGTTGTC TGCGGCAGCG
GTGGCGGCCA ACGGTGAAGT GGTGGTGTCA TTCGATTACA TGAACCAGGT GCTGGAACTG
AATCTCACCG ACCGTACGGC AGTTTGCCAG CCGGGCGTGA TCACCCGGCA GTTGCAGGCG
CTGGCCGAAG ACAACGGCCT TTATTACCCG GTCGACTTTG CCTCGTCGGG CTCCAGCCAG
ATCGGCGGCA ATATCGGCAC CAATGCGGGC GGGATCAAGG TCATTCGCTA CGGTATGACC
CGCAACTGGG TGGCTGGCCT CAAAGTGGTC ACCGGCAAGG GCGACCTGCT TGAACTGAAC
AAGGACCTGA TCAAGAACGC CACCGGTTAC GACCTGCGGC AGTTGTTCAT CGGTGCCGAA
GGCACGCTGG GGTTCGTGGT CGAAGCCACC ATGCGCCTCG ACCGCGCGCC GAAAAACCTC
ACTGCGATGG TGTTGGGTAC CACCGATTTC AACTCGATCA TGCCTGTGTT GCATGCCTTC
CACGGCAAGC TCGACCTGAC AGCCTTCGAA TTCTTCTCCG ACAAGTCTTT CGCCCGGGTC
ATGGCGCGCG GCGATGTGCC GTCACCCTTT GATACGCCTT GCCCGTTCTA TGTGCTGCTG
GAATTTGAAG CGACCACCGA AGACCTTGCC GATCAGGCGC TGGCGACCTT TGAGCATTGC
GTCGAGCAGG GCTGGGTGCT GGACGGGGTC ATGAGCCAAA GCGAGCAGCA GCTGCGCAAC
CTGTGGAAGC TGCGCGAATA CATCTCCGAG ACCATCTCGC ACTTCACCCC GTACAAGAAC
GACATCTCGG TCTCGGTCTC GAAAGTGCCG GAATTTCTCG CTGAAATCGA CGCCATCGTT
GCCGAGTACT ACCCGGACTT CGAAGTGCTC TGGTACGGCC ATATCGGCGA CGGCAACCTG
CACCTGAACA TCCTCAAGCC TGAAAACCTC GACAAGGACG AGTTCTTCGT CAAATGTGCG
CGGGTCAACA AATGGGTGTT CGAGACCGTA GAAAAGTACA ACGGCTCGAT TTCTGCCGAG
CATGGCGTCG GGATGACCAA ACGCGATTAC CTGACGTACA GTCGCTCGCC GGTGGAAATC
GAGTACATGA AGGCGTTGAA AGCGGTCTTC GACCCCAACG GCATCATGAA CCCCGGAAAG
ATATTCGCCG TTTGA
|
|---|
| Protein sequence | MTHPALIDEL QALADPGKVL TDAGSLETYG KDWTRQFTPA PLAIVFPKTT EQVQAIVRWA
NERLVALVPS GGRTGLSAAA VAANGEVVVS FDYMNQVLEL NLTDRTAVCQ PGVITRQLQA
LAEDNGLYYP VDFASSGSSQ IGGNIGTNAG GIKVIRYGMT RNWVAGLKVV TGKGDLLELN
KDLIKNATGY DLRQLFIGAE GTLGFVVEAT MRLDRAPKNL TAMVLGTTDF NSIMPVLHAF
HGKLDLTAFE FFSDKSFARV MARGDVPSPF DTPCPFYVLL EFEATTEDLA DQALATFEHC
VEQGWVLDGV MSQSEQQLRN LWKLREYISE TISHFTPYKN DISVSVSKVP EFLAEIDAIV
AEYYPDFEVL WYGHIGDGNL HLNILKPENL DKDEFFVKCA RVNKWVFETV EKYNGSISAE
HGVGMTKRDY LTYSRSPVEI EYMKALKAVF DPNGIMNPGK IFAV
|
|---|
| |