| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5279 |
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| Symbol | cadA-1 |
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| ID | 1186964 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 6003536 |
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| End bp | 6005794 |
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| Gene Length | 2259 bp |
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| Protein Length | 752 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637396598 |
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| Product | cadmium-translocating P-type ATPase |
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| Protein accession | NP_795010 |
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| Protein GI | 28872391 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG2217] Cation transport ATPase |
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| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01512] heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCACGA CAATCAAGAA TCCCTCCGCA CATGACCACG ATCATGACCA TGATCACGGG
GCGCACGAAC ACGAGCATAA ATCCCCAGAG CCTGCGCATT CGTGCTGCTC CAGTGATGCG
CAACCTGCCG TGGTGACGTT TGCCGACGCG CCGACATCCG GTAGCCGCTT GAGCAACTTC
CGTATCGAAG CGATGGATTG CCCGACCGAG CAGACCCTGA TCCAGAACAA GCTCGGCAAG
CTGGCCGGTG TGCAGAAGCT CGAGTTCAAC CTGATCAACC GCCTGCTGGG CGTCTGGCAT
GACCTGCCGT CCACCGATCC GATTCGCGAG GCCATCAGCT CGCTGGGCAT GCAGGCCGAG
CCGGTCGAGG AGGGTGTTGT GCCTGCTGCA TCGGTTCCTG CGCCGGCGAA ACACTGGTGG
CCATTGGCAT TGTCCGGCGT CACAGCGCTG GGTGCCGAAG TGGTCCATCT GGCTTCACTC
GGCCCGACTT GGGTCGTTGC GCTGCTGGCG TTGGTGTCGA TCTTCAGTTG TGGGTTGACC
ACCTATAAAA AGGGCTGGAT CGCGCTTAAG AACTTCAACC TGAACATCAA TGCCCTGATG
AGCATTGCGG TGACCGGCGC GATTCTGATC GGTCAGTGGC CTGAAGCGGC GATGGTGATG
TTTCTGTTTA CCGTGGCCGA GTTGATCGAA GCCAAATCCC TGGACCGCGC CCGCAACGCG
ATCAGCGGCC TGATGCAACT GACGCCGGAA CTGGCGACCG TGAAGCAGGC TGATGGCAGC
TGGCAGGAAA TTGAAGCCAA AAATGTCGAA CTGGGCGCTA TCGTCAGGAT AAAGCCGGGT
GAGCGGGTCG GGCTGGATGG TGAAGTGGTG TCCGGTAACT CGACCATTGA TCAGGCCTCT
ATCACGGGTG AAAGCCTGCC GGTCGAGAAA ACCATTGGCG ATAAAGTTTT CGCGGGCACT
ATCAACCAGG CAGGGTCGCT GGAGTATCGC GTCACCGCTG CGGCGAACAA TTCGACGCTG
GCGCGCATCA TTCATGCGGT GGAAGCGGCC CAGGGTTCAC GCGCGCCGAC TCAGCGTTTC
GTCGACAGCT TCTCGCGCAT CTATACGCCA GTAGTGTTCG TTGTCGCGTT GGGCGTGGCG
CTGATTGCGC CGCTGTTTTT TGGCGGGCAA TGGTTTGACT GGATCTACCG GGCGCTGGTG
TTGCTGGTCG TCGCGTGCCC GTGTGCGCTG GTGATTTCTA CGCCGGTGAC CATTGTCAGC
GGCCTGGCAG CAGCGGCGCG CAAAGGCATT CTGATCAAGG GCGGCGTTTA TCTGGAGATG
GGCGAGAAGC TTGATTACCT GGCCCTCGAC AAGACCGGCA CCCTGACCCA CGGCAAGCCG
GTGCAGACCG ATTACGTGCC GCTGGACCCC ACAGTCGCCG AAAGCGCGCC GGCGATTGCC
GCGAGCCTTG CCGGGCGCTC CGATCACCCT GTTTCTCAGG CGATTGCCAA AGCCGCTGAT
AACAGCCTGA CGTTGTACGA GGTCACAGCG TTTGAGGCCT TGGGCGGGCG TGGCGTGAAG
GGCGAAGTGA ACGGCCAGAT GTACCATTTG GGCAACCACC GCTTGGTCGA AGAGCTGGGC
CTGTGCTCGC CAGCGCTGGA AGCCAGGCTT GATGCGCTGG AAATGCAGGG CAAGACTGTA
GTGCTGTTGC TGGATGCGTC CGGTCCGATC GCGCTGTTTG CGGTAGCCGA CACCGTGAAG
GAAACCAGCC GTGAAGCCAT TGCTCAGTTG CATGAACTGG GCATCAAGAC CGTCATGCTG
ACGGGTGATA ACCCGCACAC CGCCAAGGCA ATTGCCGATC AGGTCGGGAT CGATGAAGCG
CAGGGCAACC TGCTGCCTGC CGACAAACTG AGTGCCATCG AAGCGCTTTA CGCGCGCAAC
CATCGCGTGG GCATGGTGGG TGACGGCATC AACGATGCCC CGGCACTGGC TCGGGCCGAG
ATTGGCTTTG CGATGGCGGC TGCGGGGACT GACACGGCGA TCGAAACGGC AGATGTCGCC
CTGATGGACG ATGATCTGCG CAAAATCCCG ACGTTCATTC GACTGTCCCG TCAGACCTCG
GCGGTGCTCA AGCAAAACAT TATCCTGGCC ATCGCGACCA AAGTGCTGTT CATCGGCATC
ACCTTCGCGG GCCTGGCGAC CATGTGGATG GCCGTATTTG CCGACATGGG CGTGAGCCTG
CTGGTGGTGT TCAACGGCTT GCGATTGCTC AAGAAGTGA
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| Protein sequence | MGTTIKNPSA HDHDHDHDHG AHEHEHKSPE PAHSCCSSDA QPAVVTFADA PTSGSRLSNF
RIEAMDCPTE QTLIQNKLGK LAGVQKLEFN LINRLLGVWH DLPSTDPIRE AISSLGMQAE
PVEEGVVPAA SVPAPAKHWW PLALSGVTAL GAEVVHLASL GPTWVVALLA LVSIFSCGLT
TYKKGWIALK NFNLNINALM SIAVTGAILI GQWPEAAMVM FLFTVAELIE AKSLDRARNA
ISGLMQLTPE LATVKQADGS WQEIEAKNVE LGAIVRIKPG ERVGLDGEVV SGNSTIDQAS
ITGESLPVEK TIGDKVFAGT INQAGSLEYR VTAAANNSTL ARIIHAVEAA QGSRAPTQRF
VDSFSRIYTP VVFVVALGVA LIAPLFFGGQ WFDWIYRALV LLVVACPCAL VISTPVTIVS
GLAAAARKGI LIKGGVYLEM GEKLDYLALD KTGTLTHGKP VQTDYVPLDP TVAESAPAIA
ASLAGRSDHP VSQAIAKAAD NSLTLYEVTA FEALGGRGVK GEVNGQMYHL GNHRLVEELG
LCSPALEARL DALEMQGKTV VLLLDASGPI ALFAVADTVK ETSREAIAQL HELGIKTVML
TGDNPHTAKA IADQVGIDEA QGNLLPADKL SAIEALYARN HRVGMVGDGI NDAPALARAE
IGFAMAAAGT DTAIETADVA LMDDDLRKIP TFIRLSRQTS AVLKQNIILA IATKVLFIGI
TFAGLATMWM AVFADMGVSL LVVFNGLRLL KK
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