| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5276 |
|---|
| Symbol | |
|---|
| ID | 1186961 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 5999980 |
|---|
| End bp | 6001356 |
|---|
| Gene Length | 1377 bp |
|---|
| Protein Length | 458 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637396595 |
|---|
| Product | proline-specific permease proY |
|---|
| Protein accession | NP_795007 |
|---|
| Protein GI | 28872388 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGTCAC AAGATGGTTT GAAACGCGGG TTATCCGCCC GCCACATCCG CTTCATGGCC
CTGGGCTCTG CCATCGGCAC AGGGTTGTTC TACGGCTCGG CCTCGGCGAT TCAACAGGCC
GGTCCCGCTG TATTGCTGGC GTACCTGATC GGCGGCGCGG CGGTGTACAT GGTAATGCGC
GCACTGGGCG AAATGGCTGT TCACGACCCG GTGTCCGGTT CGTTCAGCCA TTACGCCACA
CGCTACATGG GGCCGCTGGC CGGTTTCGTG CTGGGCTGGA CCTACGCGTT CGAGATGATC
ATCGTCTGTC TGGCCGATGT GACAGCCTTC GGCATTTACA TGGGCTTCTG GTTTCCGGAA
GTGCCGCGCT GGATCTGGGT GCTGGGCATC GTGTTCCTGA TCGGCGCGCT CAACCTGTGC
AACGTCAAAG TTTTCGGCGA AACCGAATTC TGGCTGTCGA TCCTCAAGGT CAGCGCCATC
GTGGCGATGA TCGTTGCAGG CTTCGGCATC ATGATCTTCG GCATCGGCAG CTCGACCAGC
GGCACTGAAA TCGGCATCAG CAACCTGTGG GCGCATGGCG GCTTCATGCC CAACGGCGTC
ACCGGCCTGA TCGCTTCGTT TGCAGTGGTG ATGTTTGCTT TCGGCGGCAT CGAGATCATC
GGCATCACGG CCGGTGAGGC AAAGGACCCG CAACGCAGCC TGCCGCAGGC AATCAACGCG
GTGCCGCTGC GTATTCTGCT GTTCTACGTG CTGACCCTGT TTGTGCTGAT GTGTATTTAT
CCGTGGCCGC AAATCGGCAC CCAAGGCAGC CCGTTCGTAC AGATTTTCGA CAACCTGGGC
ATTGCCTCGG CGGCGACCAT TCTCAACATC GTGGTGATCT CGGCGGCGGT GTCAGCTATC
AACAGCGACA TCTTCGGCGC AGGCCGCATG ATGTACGGCC TGGCCCGCGA CGGTCAGGCG
CCGGCGAGTT TTGCGCGCCT GTCGCGTCAG GGCGTGCCGT GGATGACCGT GCTGGTGATG
GGCGTGACGC TGCTCGGCGG CGTGCTGCTC AACTACCTGA TCCCCAAAGA CGTGTTCCTG
CTGATCGCGT CGCTGGCAAC CTTCGCCACG GTCTGGGTCT GGCTGATGAT CCTGCTGACT
CAGGTCGCCA TGCGCCGCTC GATGAGCCGC GAAGAGGTCA CACAGCTCAA GTTTGCGGTG
CCGTTCTGGC CTTACGGGCC TGCCGCCGCC ATTGCCTTCA TGCTGTTCAT CTTCGGCGTT
CTGGGCTATT TCCCGGACAA CCGTGCAGCC TTGATCGTCG GCGCAATCTG GATTGCGCTG
CTGCTCATCG CCTACGGGTT GTGGGTCAAG CCAAAGGCGC TCAACAAAAC CCATTGA
|
|---|
| Protein sequence | MTSQDGLKRG LSARHIRFMA LGSAIGTGLF YGSASAIQQA GPAVLLAYLI GGAAVYMVMR
ALGEMAVHDP VSGSFSHYAT RYMGPLAGFV LGWTYAFEMI IVCLADVTAF GIYMGFWFPE
VPRWIWVLGI VFLIGALNLC NVKVFGETEF WLSILKVSAI VAMIVAGFGI MIFGIGSSTS
GTEIGISNLW AHGGFMPNGV TGLIASFAVV MFAFGGIEII GITAGEAKDP QRSLPQAINA
VPLRILLFYV LTLFVLMCIY PWPQIGTQGS PFVQIFDNLG IASAATILNI VVISAAVSAI
NSDIFGAGRM MYGLARDGQA PASFARLSRQ GVPWMTVLVM GVTLLGGVLL NYLIPKDVFL
LIASLATFAT VWVWLMILLT QVAMRRSMSR EEVTQLKFAV PFWPYGPAAA IAFMLFIFGV
LGYFPDNRAA LIVGAIWIAL LLIAYGLWVK PKALNKTH
|
|---|
| |